Analysis of interatomic Contacts of Structural Units in PDB entry:
5VWW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VWW entry

There are 4 chains in PDB entry 5VWW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 19LEU 181
B
 SER 23ASN 185
C
 MET 142ARG 166
D
 ARG 143ALA 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5VWW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 49Right-handed alpha
Helix 2
AA2
A
69 101Right-handed alpha
Helix 3
AA3
A
106 120Right-handed alpha
Helix 4
AA4
A
124 146Right-handed alpha
Helix 5
AA5
A
146 165Right-handed alpha
Helix 6
AA6
A
166 174Right-handed alpha
Helix 7
AA7
A
176 181Right-handed 310
Helix 8
AA8
B
24 45Right-handed alpha
Helix 9
AA9
B
69 101Right-handed alpha
Helix 10
AB1
B
106 120Right-handed alpha
Helix 11
AB2
B
124 146Right-handed alpha
Helix 12
AB3
B
146 165Right-handed alpha
Helix 13
AB4
B
166 174Right-handed alpha
Helix 14
AB5
B
176 183Right-handed 310
Helix 15
AB6
C
143 164Right-handed alpha
Helix 16
AB7
D
144 161Right-handed alpha
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There are no sheets in PDB entry 5VWW
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il