Analysis of interatomic Contacts of Structural Units in PDB entry:
5VX6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VX6 entry

There are 2 chains in PDB entry 5VX6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2ARG 212
B
 MET 0ARG 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 5VX6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
192 209Right-handed alpha
Helix 2
AA2
B
90 94Right-handed 310
Helix 3
AA3
B
192 208Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5VX6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 14first strand
Strand 2
A
17 27anti-parallel
Strand 3
A
32 40anti-parallel
Strand 4
A
82 87anti-parallel
Strand 5
A
73 78anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
66 70anti-parallel
Strand 3
A
95 96anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 114first strand
Strand 2
A
121 128anti-parallel
Strand 3
A
132 136anti-parallel
Strand 4
A
182 190anti-parallel
Strand 5
A
162 175anti-parallel
Strand 6
A
148 155anti-parallel
Strand 7
A
110 114anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 78first strand
Strand 2
B
81 87anti-parallel
Strand 3
B
32 40anti-parallel
Strand 4
B
17 28anti-parallel
Strand 5
B
7 14anti-parallel
Strand 6
B
54 60anti-parallel
Strand 7
B
66 72anti-parallel
Strand 8
B
95 96anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
121 129anti-parallel
Strand 3
B
132 137anti-parallel
Strand 4
B
182 191anti-parallel
Strand 5
B
160 175anti-parallel
Strand 6
B
148 157anti-parallel
Strand 7
B
110 113anti-parallel
Strand 8
B
121 129anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il