Analysis of interatomic Contacts of Structural Units in PDB entry:
5VXC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VXC entry

There is 1 chain in PDB entry 5VXC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 40LYS 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 5VXC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 62Right-handed alpha
Helix 2
AA2
A
63 65Right-handed 310
Helix 3
AA3
A
79 81Right-handed 310
Helix 4
AA4
A
82 97Right-handed alpha
Helix 5
AA5
A
110 114Right-handed 310
Helix 6
AA6
A
115 124Right-handed alpha
Helix 7
AA7
A
140 155Right-handed alpha
Helix 8
AA8
A
172 178Right-handed alpha
Helix 9
AA9
A
178 190Right-handed alpha
Helix 10
AB1
A
191 193Right-handed 310
Helix 11
AB2
A
203 212Right-handed alpha
Helix 12
AB3
A
219 221Right-handed 310
Helix 13
AB4
A
222 236Right-handed alpha
Helix 14
AB5
A
250 265Right-handed alpha
Helix 15
AB6
A
273 275Right-handed 310
Helix 16
AB7
A
276 284Right-handed alpha
Helix 17
AB8
A
287 307Right-handed alpha
Helix 18
AB9
A
320 337Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5VXC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
164 170parallel
Strand 3
A
199 202parallel
Strand 4
A
239 242parallel
Strand 5
A
268 271parallel
Strand 6
A
47 52parallel
Strand 7
A
69 73parallel
Strand 8
A
103 107parallel
Strand 9
A
132 135parallel
Strand 10
A
164 170parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
317 319anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il