Analysis of interatomic Contacts of Structural Units in PDB entry:
5VXJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VXJ entry

There are 3 chains in PDB entry 5VXJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 39	SER 322
B	GLN 1	SER 119
C	SER 43	TYR 301

There are 73 helices in PDB entry 5VXJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	66	Right-handed alpha
Helix 2	AA2	A	71	102	Right-handed alpha
Helix 3	AA3	A	107	114	Right-handed alpha
Helix 4	AA4	A	115	117	Right-handed 310
Helix 5	AA5	A	118	122	Right-handed 310
Helix 6	AA6	A	130	148	Right-handed alpha
Helix 7	AA7	A	149	173	Right-handed alpha
Helix 8	AA8	A	174	176	Right-handed 310
Helix 9	AA9	A	192	207	Right-handed alpha
Helix 10	AB1	A	219	231	Right-handed alpha
Helix 11	AB2	A	250	262	Right-handed alpha
Helix 12	AB3	A	272	320	Right-handed alpha
Helix 13	AB4	B	28	30	Right-handed 310
Helix 14	AB5	B	62	65	Right-handed 310
Helix 15	AB6	B	87	91	Right-handed 310
Helix 16	AB7	C	44	67	Right-handed alpha
Helix 17	AB8	C	71	103	Right-handed alpha
Helix 18	AB9	C	107	114	Right-handed alpha
Helix 19	AC1	C	115	117	Right-handed 310
Helix 20	AC2	C	118	122	Right-handed 310
Helix 21	AC3	C	130	148	Right-handed alpha
Helix 22	AC4	C	149	173	Right-handed alpha
Helix 23	AC5	C	174	176	Right-handed 310
Helix 24	AC6	C	192	207	Right-handed alpha
Helix 25	AC7	C	219	231	Right-handed alpha
Helix 26	AC8	C	250	262	Right-handed alpha
Helix 27	AC9	C	272	319	Right-handed alpha
Helix 28	AD1	D	28	30	Right-handed 310
Helix 29	AD2	D	62	65	Right-handed 310
Helix 30	AD3	D	87	91	Right-handed 310
Helix 31	AD4	E	43	66	Right-handed alpha
Helix 32	AD5	E	71	102	Right-handed alpha
Helix 33	AD6	E	107	114	Right-handed alpha
Helix 34	AD7	E	115	117	Right-handed 310
Helix 35	AD8	E	118	122	Right-handed 310
Helix 36	AD9	E	130	149	Right-handed alpha
Helix 37	AE1	E	149	173	Right-handed alpha
Helix 38	AE2	E	174	176	Right-handed 310
Helix 39	AE3	E	192	207	Right-handed alpha
Helix 40	AE4	E	219	231	Right-handed alpha
Helix 41	AE5	E	250	262	Right-handed alpha
Helix 42	AE6	E	272	321	Right-handed alpha
Helix 43	AE7	F	28	30	Right-handed 310
Helix 44	AE8	F	62	65	Right-handed 310
Helix 45	AE9	F	87	91	Right-handed 310
Helix 46	AF1	G	43	65	Right-handed alpha
Helix 47	AF2	G	76	102	Right-handed alpha
Helix 48	AF3	G	108	114	Right-handed alpha
Helix 49	AF4	G	115	117	Right-handed 310
Helix 50	AF5	G	118	122	Right-handed 310
Helix 51	AF6	G	130	148	Right-handed alpha
Helix 52	AF7	G	149	172	Right-handed alpha
Helix 53	AF8	G	192	207	Right-handed alpha
Helix 54	AF9	G	219	231	Right-handed alpha
Helix 55	AG1	G	250	263	Right-handed alpha
Helix 56	AG2	G	273	320	Right-handed alpha
Helix 57	AG3	H	28	30	Right-handed 310
Helix 58	AG4	H	62	65	Right-handed 310
Helix 59	AG5	H	87	91	Right-handed 310
Helix 60	AG6	I	43	62	Right-handed alpha
Helix 61	AG7	I	75	102	Right-handed alpha
Helix 62	AG8	I	107	114	Right-handed alpha
Helix 63	AG9	I	115	117	Right-handed 310
Helix 64	AH1	I	118	122	Right-handed 310
Helix 65	AH2	I	130	148	Right-handed alpha
Helix 66	AH3	I	149	175	Right-handed alpha
Helix 67	AH4	I	191	207	Right-handed alpha
Helix 68	AH5	I	219	231	Right-handed alpha
Helix 69	AH6	I	250	261	Right-handed alpha
Helix 70	AH7	I	273	321	Right-handed alpha
Helix 71	AH8	J	28	30	Right-handed 310
Helix 72	AH9	J	62	65	Right-handed 310
Helix 73	AI1	J	87	91	Right-handed 310

There are 25 sheets in PDB entry 5VXJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	180	first strand
Strand 2	A	188	191	anti-parallel
Strand 3	A	268	271	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	239	first strand
Strand 2	A	244	248	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	113	117	parallel
Strand 3	B	92	101	anti-parallel
Strand 4	B	32	39	anti-parallel
Strand 5	B	46	51	anti-parallel
Strand 6	B	59	60	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	113	117	parallel
Strand 3	B	92	101	anti-parallel
Strand 4	B	105	109	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	179	first strand
Strand 2	C	188	191	anti-parallel
Strand 3	C	268	271	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	239	first strand
Strand 2	C	244	248	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	92	101	anti-parallel
Strand 4	D	32	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	59	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	92	101	anti-parallel
Strand 4	D	105	109	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	180	first strand
Strand 2	E	188	191	anti-parallel
Strand 3	E	268	271	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	240	first strand
Strand 2	E	243	248	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	113	117	parallel
Strand 3	F	92	101	anti-parallel
Strand 4	F	32	39	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	59	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	113	117	parallel
Strand 3	F	92	101	anti-parallel
Strand 4	F	105	109	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	180	first strand
Strand 2	G	187	191	anti-parallel
Strand 3	G	268	272	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	235	240	first strand
Strand 2	G	243	248	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	59	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	105	109	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	178	180	first strand
Strand 2	I	187	190	anti-parallel
Strand 3	I	269	272	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	235	238	first strand
Strand 2	I	245	248	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	113	116	parallel
Strand 3	J	92	101	anti-parallel
Strand 4	J	32	39	anti-parallel
Strand 5	J	46	51	anti-parallel
Strand 6	J	59	60	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	113	116	parallel
Strand 3	J	92	101	anti-parallel
Strand 4	J	105	109	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VXJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VXJ