Analysis of interatomic Contacts of Structural Units in PDB entry:
5VXK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VXK entry

There are 2 chains in PDB entry 5VXK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 2VAL 126
A
 VAL 41SER 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5VXK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
28 32Right-handed 310
Helix 2
AA2
B
87 91Right-handed 310
Helix 3
AA3
B
111 115Right-handed 310
Helix 4
AA4
A
42 66Right-handed alpha
Helix 5
AA5
A
71 103Right-handed alpha
Helix 6
AA6
A
107 113Right-handed alpha
Helix 7
AA7
A
114 117Right-handed 310
Helix 8
AA8
A
118 122Right-handed 310
Helix 9
AA9
A
130 149Right-handed alpha
Helix 10
AB1
A
149 173Right-handed alpha
Helix 11
AB2
A
174 176Right-handed 310
Helix 12
AB3
A
192 207Right-handed alpha
Helix 13
AB4
A
219 229Right-handed alpha
Helix 14
AB5
A
250 262Right-handed alpha
Helix 15
AB6
A
273 321Right-handed alpha
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There are 5 sheets in PDB entry 5VXK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
122 125parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
122 125parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
117 118anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
187 191anti-parallel
Strand 3
A
268 272anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 212first strand
Strand 2
A
244 248anti-parallel
Strand 3
A
235 239anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il