Analysis of interatomic Contacts of Structural Units in PDB entry:
5VXL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VXL entry

There are 2 chains in PDB entry 5VXL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 40SER 322
B
 GLN 1SER 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5VXL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 66Right-handed alpha
Helix 2
AA2
A
71 102Right-handed alpha
Helix 3
AA3
A
107 112Right-handed alpha
Helix 4
AA4
A
113 116Right-handed 310
Helix 5
AA5
A
118 122Right-handed 310
Helix 6
AA6
A
130 148Right-handed alpha
Helix 7
AA7
A
149 173Right-handed alpha
Helix 8
AA8
A
174 176Right-handed 310
Helix 9
AA9
A
192 206Right-handed alpha
Helix 10
AB1
A
219 231Right-handed alpha
Helix 11
AB2
A
250 263Right-handed alpha
Helix 12
AB3
A
272 322Right-handed alpha
Helix 13
AB4
B
28 32Right-handed 310
Helix 14
AB5
B
88 92Right-handed 310
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There are 5 sheets in PDB entry 5VXL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
188 191anti-parallel
Strand 3
A
268 271anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 240first strand
Strand 2
A
243 248anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
69 74anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
111 115parallel
Strand 3
B
93 101anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
59 61anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
111 115parallel
Strand 3
B
93 101anti-parallel
Strand 4
B
104 107anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il