Analysis of interatomic Contacts of Structural Units in PDB entry:
5VXN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VXN entry

There are 8 chains in PDB entry 5VXN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2THR 209
B
 ASN 2SER 207
E
 T 1 A 18
F
 T 19 A 36
C
 ASN 2THR 209
D
 ASN 3VAL 208
G
 T 1 A 18
H
 T 19 A 36
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5VXN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
37 44Right-handed alpha
Helix 3
AA3
A
67 78Right-handed alpha
Helix 4
AA4
A
91 100Right-handed alpha
Helix 5
AA5
A
114 123Right-handed alpha
Helix 6
AA6
A
131 140Right-handed alpha
Helix 7
AA7
A
152 165Right-handed alpha
Helix 8
AA8
A
167 175Right-handed alpha
Helix 9
AA9
A
178 194Right-handed alpha
Helix 10
AB1
A
197 208Right-handed alpha
Helix 11
AB2
B
12 24Right-handed alpha
Helix 12
AB3
B
37 45Right-handed alpha
Helix 13
AB4
B
67 78Right-handed alpha
Helix 14
AB5
B
91 100Right-handed alpha
Helix 15
AB6
B
114 123Right-handed alpha
Helix 16
AB7
B
132 137Right-handed alpha
Helix 17
AB8
B
152 164Right-handed alpha
Helix 18
AB9
B
167 175Right-handed alpha
Helix 19
AC1
B
178 193Right-handed alpha
Helix 20
AC2
B
197 207Right-handed alpha
Helix 21
AC3
C
12 24Right-handed alpha
Helix 22
AC4
C
37 44Right-handed alpha
Helix 23
AC5
C
67 78Right-handed alpha
Helix 24
AC6
C
91 100Right-handed alpha
Helix 25
AC7
C
114 123Right-handed alpha
Helix 26
AC8
C
131 140Right-handed alpha
Helix 27
AC9
C
152 165Right-handed alpha
Helix 28
AD1
C
167 175Right-handed alpha
Helix 29
AD2
C
178 194Right-handed alpha
Helix 30
AD3
C
197 208Right-handed alpha
Helix 31
AD4
D
12 24Right-handed alpha
Helix 32
AD5
D
37 45Right-handed alpha
Helix 33
AD6
D
67 78Right-handed alpha
Helix 34
AD7
D
91 100Right-handed alpha
Helix 35
AD8
D
114 123Right-handed alpha
Helix 36
AD9
D
132 139Right-handed alpha
Helix 37
AE1
D
152 164Right-handed alpha
Helix 38
AE2
D
167 175Right-handed alpha
Helix 39
AE3
D
178 194Right-handed alpha
Helix 40
AE4
D
197 208Right-handed alpha
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There are 4 sheets in PDB entry 5VXN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 35first strand
Strand 2
A
4 9parallel
Strand 3
A
52 55parallel
Strand 4
A
82 87parallel
Strand 5
A
106 108parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 35first strand
Strand 2
B
4 9parallel
Strand 3
B
52 55parallel
Strand 4
B
82 87parallel
Strand 5
B
106 108parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 35first strand
Strand 2
C
4 9parallel
Strand 3
C
52 55parallel
Strand 4
C
82 87parallel
Strand 5
C
106 108parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 35first strand
Strand 2
D
5 9parallel
Strand 3
D
52 55parallel
Strand 4
D
82 87parallel
Strand 5
D
106 108parallel
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