Analysis of interatomic Contacts of Structural Units in PDB entry:
5VXO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VXO entry

There are 3 chains in PDB entry 5VXO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 40ILE 337
B
 HIS 40ILE 337
C
 HIS 40ILE 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 5VXO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 62Right-handed alpha
Helix 2
AA2
A
63 65Right-handed 310
Helix 3
AA3
A
79 81Right-handed 310
Helix 4
AA4
A
82 97Right-handed alpha
Helix 5
AA5
A
110 114Right-handed 310
Helix 6
AA6
A
115 125Right-handed alpha
Helix 7
AA7
A
140 155Right-handed alpha
Helix 8
AA8
A
172 190Right-handed alpha
Helix 9
AA9
A
203 212Right-handed alpha
Helix 10
AB1
A
219 221Right-handed 310
Helix 11
AB2
A
222 236Right-handed alpha
Helix 12
AB3
A
250 264Right-handed alpha
Helix 13
AB4
A
273 275Right-handed 310
Helix 14
AB5
A
276 284Right-handed alpha
Helix 15
AB6
A
287 307Right-handed alpha
Helix 16
AB7
A
320 337Right-handed alpha
Helix 17
AB8
B
55 61Right-handed alpha
Helix 18
AB9
B
62 65Right-handed 310
Helix 19
AC1
B
79 81Right-handed 310
Helix 20
AC2
B
82 97Right-handed alpha
Helix 21
AC3
B
110 114Right-handed 310
Helix 22
AC4
B
115 125Right-handed alpha
Helix 23
AC5
B
140 156Right-handed alpha
Helix 24
AC6
B
172 190Right-handed alpha
Helix 25
AC7
B
191 193Right-handed 310
Helix 26
AC8
B
203 211Right-handed alpha
Helix 27
AC9
B
219 221Right-handed 310
Helix 28
AD1
B
222 236Right-handed alpha
Helix 29
AD2
B
250 265Right-handed alpha
Helix 30
AD3
B
273 275Right-handed 310
Helix 31
AD4
B
276 284Right-handed alpha
Helix 32
AD5
B
287 307Right-handed alpha
Helix 33
AD6
B
320 337Right-handed alpha
Helix 34
AD7
C
55 62Right-handed alpha
Helix 35
AD8
C
63 65Right-handed 310
Helix 36
AD9
C
79 81Right-handed 310
Helix 37
AE1
C
82 97Right-handed alpha
Helix 38
AE2
C
110 114Right-handed 310
Helix 39
AE3
C
115 125Right-handed alpha
Helix 40
AE4
C
140 156Right-handed alpha
Helix 41
AE5
C
172 190Right-handed alpha
Helix 42
AE6
C
191 193Right-handed 310
Helix 43
AE7
C
203 212Right-handed alpha
Helix 44
AE8
C
219 221Right-handed 310
Helix 45
AE9
C
222 236Right-handed alpha
Helix 46
AF1
C
250 265Right-handed alpha
Helix 47
AF2
C
273 275Right-handed 310
Helix 48
AF3
C
276 284Right-handed alpha
Helix 49
AF4
C
287 307Right-handed alpha
Helix 50
AF5
C
320 337Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5VXO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
164 170parallel
Strand 3
A
199 202parallel
Strand 4
A
239 242parallel
Strand 5
A
268 271parallel
Strand 6
A
47 52parallel
Strand 7
A
69 73parallel
Strand 8
A
103 107parallel
Strand 9
A
132 135parallel
Strand 10
A
164 170parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
317 319anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
164 170parallel
Strand 3
B
199 202parallel
Strand 4
B
239 242parallel
Strand 5
B
268 271parallel
Strand 6
B
47 52parallel
Strand 7
B
69 73parallel
Strand 8
B
103 107parallel
Strand 9
B
132 135parallel
Strand 10
B
164 170parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 314first strand
Strand 2
B
317 319anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
195 197first strand
Strand 2
C
164 170parallel
Strand 3
C
199 202parallel
Strand 4
C
239 242parallel
Strand 5
C
268 271parallel
Strand 6
C
47 52parallel
Strand 7
C
69 73parallel
Strand 8
C
103 107parallel
Strand 9
C
132 135parallel
Strand 10
C
164 170parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
312 314first strand
Strand 2
C
317 319anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il