Analysis of interatomic Contacts of Structural Units in PDB entry:
5VXS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VXS entry

There are 6 chains in PDB entry 5VXS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 40ILE 337
B
 HIS 40LYS 338
C
 HIS 40LYS 340
D
 HIS 40ILE 337
E
 HIS 40LYS 340
F
 HIS 40LYS 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 5VXS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 61Right-handed alpha
Helix 2
AA2
A
62 65Right-handed 310
Helix 3
AA3
A
82 97Right-handed alpha
Helix 4
AA4
A
110 114Right-handed 310
Helix 5
AA5
A
115 124Right-handed alpha
Helix 6
AA6
A
140 156Right-handed alpha
Helix 7
AA7
A
172 178Right-handed alpha
Helix 8
AA8
A
178 190Right-handed alpha
Helix 9
AA9
A
203 212Right-handed alpha
Helix 10
AB1
A
218 221Right-handed 310
Helix 11
AB2
A
222 236Right-handed alpha
Helix 12
AB3
A
250 265Right-handed alpha
Helix 13
AB4
A
273 275Right-handed 310
Helix 14
AB5
A
276 284Right-handed alpha
Helix 15
AB6
A
287 300Right-handed alpha
Helix 16
AB7
A
323 337Right-handed alpha
Helix 17
AB8
B
55 61Right-handed alpha
Helix 18
AB9
B
62 65Right-handed 310
Helix 19
AC1
B
79 81Right-handed 310
Helix 20
AC2
B
82 97Right-handed alpha
Helix 21
AC3
B
115 124Right-handed alpha
Helix 22
AC4
B
140 155Right-handed alpha
Helix 23
AC5
B
172 178Right-handed alpha
Helix 24
AC6
B
178 190Right-handed alpha
Helix 25
AC7
B
191 193Right-handed 310
Helix 26
AC8
B
203 211Right-handed alpha
Helix 27
AC9
B
219 221Right-handed 310
Helix 28
AD1
B
222 236Right-handed alpha
Helix 29
AD2
B
250 265Right-handed alpha
Helix 30
AD3
B
273 275Right-handed 310
Helix 31
AD4
B
276 284Right-handed alpha
Helix 32
AD5
B
287 302Right-handed alpha
Helix 33
AD6
B
321 337Right-handed alpha
Helix 34
AD7
C
55 61Right-handed alpha
Helix 35
AD8
C
62 65Right-handed 310
Helix 36
AD9
C
82 97Right-handed alpha
Helix 37
AE1
C
110 114Right-handed 310
Helix 38
AE2
C
115 124Right-handed alpha
Helix 39
AE3
C
140 156Right-handed alpha
Helix 40
AE4
C
172 194Right-handed alpha
Helix 41
AE5
C
203 212Right-handed alpha
Helix 42
AE6
C
219 221Right-handed 310
Helix 43
AE7
C
222 236Right-handed alpha
Helix 44
AE8
C
250 265Right-handed alpha
Helix 45
AE9
C
273 275Right-handed 310
Helix 46
AF1
C
276 284Right-handed alpha
Helix 47
AF2
C
287 306Right-handed alpha
Helix 48
AF3
C
320 338Right-handed alpha
Helix 49
AF4
D
55 60Right-handed alpha
Helix 50
AF5
D
61 65Right-handed 310
Helix 51
AF6
D
82 95Right-handed alpha
Helix 52
AF7
D
110 114Right-handed 310
Helix 53
AF8
D
115 124Right-handed alpha
Helix 54
AF9
D
140 154Right-handed alpha
Helix 55
AG1
D
172 178Right-handed alpha
Helix 56
AG2
D
178 190Right-handed alpha
Helix 57
AG3
D
191 193Right-handed 310
Helix 58
AG4
D
203 212Right-handed alpha
Helix 59
AG5
D
219 221Right-handed 310
Helix 60
AG6
D
222 236Right-handed alpha
Helix 61
AG7
D
250 265Right-handed alpha
Helix 62
AG8
D
273 275Right-handed 310
Helix 63
AG9
D
276 284Right-handed alpha
Helix 64
AH1
D
287 303Right-handed alpha
Helix 65
AH2
D
320 337Right-handed alpha
Helix 66
AH3
E
55 61Right-handed alpha
Helix 67
AH4
E
82 97Right-handed alpha
Helix 68
AH5
E
110 114Right-handed 310
Helix 69
AH6
E
115 124Right-handed alpha
Helix 70
AH7
E
140 155Right-handed alpha
Helix 71
AH8
E
172 178Right-handed alpha
Helix 72
AH9
E
178 190Right-handed alpha
Helix 73
AI1
E
191 193Right-handed 310
Helix 74
AI2
E
203 212Right-handed alpha
Helix 75
AI3
E
219 221Right-handed 310
Helix 76
AI4
E
222 236Right-handed alpha
Helix 77
AI5
E
250 264Right-handed alpha
Helix 78
AI6
E
273 275Right-handed 310
Helix 79
AI7
E
276 284Right-handed alpha
Helix 80
AI8
E
287 299Right-handed alpha
Helix 81
AI9
E
320 339Right-handed alpha
Helix 82
AJ1
F
55 62Right-handed alpha
Helix 83
AJ2
F
63 65Right-handed 310
Helix 84
AJ3
F
82 97Right-handed alpha
Helix 85
AJ4
F
110 114Right-handed 310
Helix 86
AJ5
F
115 124Right-handed alpha
Helix 87
AJ6
F
140 155Right-handed alpha
Helix 88
AJ7
F
172 194Right-handed alpha
Helix 89
AJ8
F
203 212Right-handed alpha
Helix 90
AJ9
F
219 221Right-handed 310
Helix 91
AK1
F
222 236Right-handed alpha
Helix 92
AK2
F
250 264Right-handed alpha
Helix 93
AK3
F
273 275Right-handed 310
Helix 94
AK4
F
276 284Right-handed alpha
Helix 95
AK5
F
287 306Right-handed alpha
Helix 96
AK6
F
321 339Right-handed alpha
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There are 6 sheets in PDB entry 5VXS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
164 170parallel
Strand 3
A
199 202parallel
Strand 4
A
239 242parallel
Strand 5
A
268 271parallel
Strand 6
A
47 52parallel
Strand 7
A
69 73parallel
Strand 8
A
103 107parallel
Strand 9
A
132 135parallel
Strand 10
A
164 170parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
164 170parallel
Strand 3
B
199 202parallel
Strand 4
B
239 242parallel
Strand 5
B
268 271parallel
Strand 6
B
47 52parallel
Strand 7
B
69 73parallel
Strand 8
B
103 107parallel
Strand 9
B
132 135parallel
Strand 10
B
164 170parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
195 197first strand
Strand 2
C
164 170parallel
Strand 3
C
199 202parallel
Strand 4
C
239 242parallel
Strand 5
C
268 271parallel
Strand 6
C
47 52parallel
Strand 7
C
69 73parallel
Strand 8
C
103 107parallel
Strand 9
C
132 135parallel
Strand 10
C
164 170parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
195 197first strand
Strand 2
D
164 170parallel
Strand 3
D
199 202parallel
Strand 4
D
239 242parallel
Strand 5
D
268 271parallel
Strand 6
D
47 52parallel
Strand 7
D
69 73parallel
Strand 8
D
103 107parallel
Strand 9
D
132 135parallel
Strand 10
D
164 170parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
195 197first strand
Strand 2
E
164 170parallel
Strand 3
E
199 202parallel
Strand 4
E
239 242parallel
Strand 5
E
268 271parallel
Strand 6
E
47 52parallel
Strand 7
E
69 73parallel
Strand 8
E
103 107parallel
Strand 9
E
132 135parallel
Strand 10
E
164 170parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
195 197first strand
Strand 2
F
164 170parallel
Strand 3
F
199 202parallel
Strand 4
F
239 242parallel
Strand 5
F
268 271parallel
Strand 6
F
47 52parallel
Strand 7
F
69 73parallel
Strand 8
F
103 107parallel
Strand 9
F
132 135parallel
Strand 10
F
164 170parallel
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