Analysis of interatomic Contacts of Structural Units in PDB entry:
5VXT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VXT entry

There are 2 chains in PDB entry 5VXT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -3ALA 315
B
 HIS -3THR 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5VXT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 20Right-handed alpha
Helix 2
AA2
A
33 55Right-handed alpha
Helix 3
AA3
A
57 74Right-handed alpha
Helix 4
AA4
A
76 84Right-handed alpha
Helix 5
AA5
A
85 102Right-handed alpha
Helix 6
AA6
A
212 222Right-handed alpha
Helix 7
AA7
A
264 268Right-handed 310
Helix 8
AA8
A
277 281Right-handed 310
Helix 9
AA9
B
8 20Right-handed alpha
Helix 10
AB1
B
33 55Right-handed alpha
Helix 11
AB2
B
57 74Right-handed alpha
Helix 12
AB3
B
76 84Right-handed alpha
Helix 13
AB4
B
85 102Right-handed alpha
Helix 14
AB5
B
212 222Right-handed alpha
Helix 15
AB6
B
264 268Right-handed 310
Helix 16
AB7
B
277 281Right-handed 310
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There are 8 sheets in PDB entry 5VXT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
313 314parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
185 189parallel
Strand 3
A
158 162anti-parallel
Strand 4
A
230 236anti-parallel
Strand 5
A
243 248anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
195 201parallel
Strand 3
A
139 147anti-parallel
Strand 4
A
287 291parallel
Strand 5
A
272 274anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
195 201parallel
Strand 3
A
139 147anti-parallel
Strand 4
A
294 295parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
313 314parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
185 189parallel
Strand 3
B
158 162anti-parallel
Strand 4
B
230 236anti-parallel
Strand 5
B
243 248anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 128first strand
Strand 2
B
195 201parallel
Strand 3
B
139 147anti-parallel
Strand 4
B
287 291parallel
Strand 5
B
272 274anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 128first strand
Strand 2
B
195 201parallel
Strand 3
B
139 147anti-parallel
Strand 4
B
294 295parallel
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