Analysis of interatomic Contacts of Structural Units in PDB entry:
5VY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VY1 entry

There are 2 chains in PDB entry 5VY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1ALA 462
B
 PRO 246VAL 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5VY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
267 286Right-handed alpha
Helix 2
AA2
A
286 293Right-handed alpha
Helix 3
AA3
A
350 352Right-handed 310
Helix 4
AA4
A
356 361Right-handed 310
Helix 5
AA5
A
394 406Right-handed alpha
Helix 6
AA6
A
449 457Right-handed alpha
Helix 7
AA7
B
267 286Right-handed alpha
Helix 8
AA8
B
286 293Right-handed alpha
Helix 9
AA9
B
350 352Right-handed 310
Helix 10
AB1
B
356 361Right-handed 310
Helix 11
AB2
B
394 406Right-handed alpha
Helix 12
AB3
B
449 457Right-handed alpha
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There are 5 sheets in PDB entry 5VY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 257first strand
Strand 2
A
260 265anti-parallel
Strand 3
A
367 371anti-parallel
Strand 4
A
432 440parallel
Strand 5
A
412 423anti-parallel
Strand 6
A
248 257anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 348first strand
Strand 2
A
332 338anti-parallel
Strand 3
A
314 324anti-parallel
Strand 4
A
303 307anti-parallel
Strand 5
A
353 354anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
460 461anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 257first strand
Strand 2
B
260 265anti-parallel
Strand 3
B
367 371anti-parallel
Strand 4
B
435 440parallel
Strand 5
B
412 420anti-parallel
Strand 6
B
248 257anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 348first strand
Strand 2
B
328 338anti-parallel
Strand 3
B
314 325anti-parallel
Strand 4
B
303 307anti-parallel
Strand 5
B
353 354anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il