Analysis of interatomic Contacts of Structural Units in PDB entry:
5VY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VY2 entry

There are 2 chains in PDB entry 5VY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4GLN 182
B
 ALA 4LEU 181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5VY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 14Right-handed alpha
Helix 2
AA2
A
36 38Right-handed 310
Helix 3
AA3
A
68 82Right-handed alpha
Helix 4
AA4
A
83 88Right-handed 310
Helix 5
AA5
A
91 93Right-handed 310
Helix 6
AA6
A
116 127Right-handed alpha
Helix 7
AA7
A
128 130Right-handed 310
Helix 8
AA8
A
154 159Right-handed alpha
Helix 9
AA9
A
166 178Right-handed alpha
Helix 10
AB1
B
8 14Right-handed alpha
Helix 11
AB2
B
36 38Right-handed 310
Helix 12
AB3
B
68 82Right-handed alpha
Helix 13
AB4
B
83 88Right-handed 310
Helix 14
AB5
B
91 93Right-handed 310
Helix 15
AB6
B
116 127Right-handed alpha
Helix 16
AB7
B
128 130Right-handed 310
Helix 17
AB8
B
154 159Right-handed alpha
Helix 18
AB9
B
166 178Right-handed alpha
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There are 4 sheets in PDB entry 5VY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
95 100anti-parallel
Strand 3
A
106 114anti-parallel
Strand 4
A
20 35parallel
Strand 5
A
39 50anti-parallel
Strand 6
A
59 61first strand
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
39 50anti-parallel
Strand 3
A
20 35anti-parallel
Strand 4
A
137 142first strand
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
39 50anti-parallel
Strand 3
B
20 35anti-parallel
Strand 4
B
106 114parallel
Strand 5
B
95 100anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
20 35anti-parallel
Strand 3
B
39 50anti-parallel
Strand 4
B
137 142anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il