Analysis of interatomic Contacts of Structural Units in PDB entry:
5VY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VY8 entry

There are 6 chains in PDB entry 5VY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 166	ASN 884
B	TYR 166	ASN 884
C	TYR 166	ASN 884
D	TYR 166	ASN 884
E	TYR 166	ASN 884
F	TYR 166	ASN 884

There are196 helices in PDB entry 5VY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	166	171	Right-handed alpha
Helix 2	AA2	A	174	181	Right-handed alpha
Helix 3	AA3	A	189	202	Right-handed alpha
Helix 4	AA4	A	217	231	Right-handed alpha
Helix 5	AA5	A	235	239	Right-handed 310
Helix 6	AA6	A	259	274	Right-handed alpha
Helix 7	AA7	A	285	289	Right-handed 310
Helix 8	AA8	A	300	305	Right-handed alpha
Helix 9	AA9	A	318	329	Right-handed alpha
Helix 10	AB1	A	330	333	Right-handed 310
Helix 11	AB2	A	344	364	Right-handed alpha
Helix 12	AB3	A	368	383	Right-handed alpha
Helix 13	AB4	A	387	409	Right-handed alpha
Helix 14	AB5	A	545	555	Right-handed alpha
Helix 15	AB6	A	565	571	Right-handed alpha
Helix 16	AB7	A	572	580	Right-handed alpha
Helix 17	AB8	A	583	598	Right-handed alpha
Helix 18	AB9	A	599	601	Right-handed 310
Helix 19	AC1	A	619	633	Right-handed alpha
Helix 20	AC2	A	644	646	Right-handed 310
Helix 21	AC3	A	671	678	Right-handed alpha
Helix 22	AC4	A	687	691	Right-handed 310
Helix 23	AC5	A	692	704	Right-handed alpha
Helix 24	AC6	A	730	735	Right-handed alpha
Helix 25	AC7	A	745	758	Right-handed alpha
Helix 26	AC8	A	759	764	Right-handed alpha
Helix 27	AC9	A	776	796	Right-handed alpha
Helix 28	AD1	A	808	819	Right-handed alpha
Helix 29	AD2	A	825	836	Right-handed alpha
Helix 30	AD3	A	836	845	Right-handed alpha
Helix 31	AD4	B	166	171	Right-handed 310
Helix 32	AD5	B	174	180	Right-handed alpha
Helix 33	AD6	B	189	202	Right-handed alpha
Helix 34	AD7	B	217	231	Right-handed alpha
Helix 35	AD8	B	235	240	Right-handed alpha
Helix 36	AD9	B	248	253	Right-handed alpha
Helix 37	AE1	B	259	274	Right-handed alpha
Helix 38	AE2	B	285	289	Right-handed 310
Helix 39	AE3	B	300	306	Right-handed alpha
Helix 40	AE4	B	307	309	Right-handed 310
Helix 41	AE5	B	318	329	Right-handed alpha
Helix 42	AE6	B	330	334	Right-handed 310
Helix 43	AE7	B	344	364	Right-handed alpha
Helix 44	AE8	B	368	383	Right-handed alpha
Helix 45	AE9	B	387	408	Right-handed alpha
Helix 46	AF1	B	543	552	Right-handed alpha
Helix 47	AF2	B	556	561	Right-handed alpha
Helix 48	AF3	B	565	571	Right-handed alpha
Helix 49	AF4	B	571	577	Right-handed alpha
Helix 50	AF5	B	583	598	Right-handed alpha
Helix 51	AF6	B	599	601	Right-handed 310
Helix 52	AF7	B	619	633	Right-handed alpha
Helix 53	AF8	B	634	638	Right-handed 310
Helix 54	AF9	B	668	678	Right-handed alpha
Helix 55	AG1	B	687	691	Right-handed 310
Helix 56	AG2	B	692	699	Right-handed alpha
Helix 57	AG3	B	699	704	Right-handed alpha
Helix 58	AG4	B	730	735	Right-handed alpha
Helix 59	AG5	B	743	758	Right-handed alpha
Helix 60	AG6	B	759	765	Right-handed alpha
Helix 61	AG7	B	775	794	Right-handed alpha
Helix 62	AG8	B	806	819	Right-handed alpha
Helix 63	AG9	B	825	846	Right-handed alpha
Helix 64	AH1	C	166	170	Right-handed 310
Helix 65	AH2	C	174	180	Right-handed alpha
Helix 66	AH3	C	189	202	Right-handed alpha
Helix 67	AH4	C	217	231	Right-handed alpha
Helix 68	AH5	C	235	240	Right-handed alpha
Helix 69	AH6	C	247	252	Right-handed alpha
Helix 70	AH7	C	259	274	Right-handed alpha
Helix 71	AH8	C	285	289	Right-handed 310
Helix 72	AH9	C	300	306	Right-handed alpha
Helix 73	AI1	C	317	329	Right-handed alpha
Helix 74	AI2	C	330	333	Right-handed 310
Helix 75	AI3	C	344	364	Right-handed alpha
Helix 76	AI4	C	368	383	Right-handed alpha
Helix 77	AI5	C	387	408	Right-handed alpha
Helix 78	AI6	C	410	433	Right-handed alpha
Helix 79	AI7	C	444	496	Right-handed alpha
Helix 80	AI8	C	498	525	Right-handed alpha
Helix 81	AI9	C	541	555	Right-handed alpha
Helix 82	AJ1	C	556	562	Right-handed alpha
Helix 83	AJ2	C	565	580	Right-handed alpha
Helix 84	AJ3	C	583	598	Right-handed alpha
Helix 85	AJ4	C	599	601	Right-handed 310
Helix 86	AJ5	C	619	633	Right-handed alpha
Helix 87	AJ6	C	634	638	Right-handed 310
Helix 88	AJ7	C	642	646	Right-handed 310
Helix 89	AJ8	C	671	678	Right-handed alpha
Helix 90	AJ9	C	687	691	Right-handed 310
Helix 91	AK1	C	692	704	Right-handed alpha
Helix 92	AK2	C	730	735	Right-handed alpha
Helix 93	AK3	C	745	758	Right-handed alpha
Helix 94	AK4	C	759	764	Right-handed alpha
Helix 95	AK5	C	775	796	Right-handed alpha
Helix 96	AK6	C	806	818	Right-handed alpha
Helix 97	AK7	C	825	847	Right-handed alpha
Helix 98	AK8	D	167	171	Right-handed alpha
Helix 99	AK9	D	174	180	Right-handed alpha
Helix 100	AL1	D	189	202	Right-handed alpha
Helix 101	AL2	D	217	231	Right-handed alpha
Helix 102	AL3	D	235	240	Right-handed alpha
Helix 103	AL4	D	259	274	Right-handed alpha
Helix 104	AL5	D	285	289	Right-handed 310
Helix 105	AL6	D	300	305	Right-handed alpha
Helix 106	AL7	D	306	309	Right-handed 310
Helix 107	AL8	D	318	329	Right-handed alpha
Helix 108	AL9	D	330	333	Right-handed 310
Helix 109	AM1	D	344	364	Right-handed alpha
Helix 110	AM2	D	369	383	Right-handed alpha
Helix 111	AM3	D	387	408	Right-handed alpha
Helix 112	AM4	D	413	433	Right-handed alpha
Helix 113	AM5	D	439	444	Right-handed alpha
Helix 114	AM6	D	444	496	Right-handed alpha
Helix 115	AM7	D	498	505	Right-handed alpha
Helix 116	AM8	D	510	525	Right-handed alpha
Helix 117	AM9	D	541	555	Right-handed alpha
Helix 118	AN1	D	556	562	Right-handed alpha
Helix 119	AN2	D	564	580	Right-handed alpha
Helix 120	AN3	D	583	599	Right-handed alpha
Helix 121	AN4	D	619	633	Right-handed alpha
Helix 122	AN5	D	634	636	Right-handed 310
Helix 123	AN6	D	644	646	Right-handed 310
Helix 124	AN7	D	671	678	Right-handed alpha
Helix 125	AN8	D	687	691	Right-handed 310
Helix 126	AN9	D	692	702	Right-handed alpha
Helix 127	AO1	D	730	735	Right-handed alpha
Helix 128	AO2	D	745	758	Right-handed alpha
Helix 129	AO3	D	759	764	Right-handed alpha
Helix 130	AO4	D	775	794	Right-handed alpha
Helix 131	AO5	D	808	817	Right-handed alpha
Helix 132	AO6	D	827	847	Right-handed alpha
Helix 133	AO7	E	174	180	Right-handed alpha
Helix 134	AO8	E	189	202	Right-handed alpha
Helix 135	AO9	E	213	217	Right-handed 310
Helix 136	AP1	E	218	232	Right-handed alpha
Helix 137	AP2	E	235	239	Right-handed 310
Helix 138	AP3	E	247	251	Right-handed 310
Helix 139	AP4	E	259	274	Right-handed alpha
Helix 140	AP5	E	285	289	Right-handed 310
Helix 141	AP6	E	300	308	Right-handed alpha
Helix 142	AP7	E	317	328	Right-handed alpha
Helix 143	AP8	E	329	334	Right-handed alpha
Helix 144	AP9	E	344	364	Right-handed alpha
Helix 145	AQ1	E	368	383	Right-handed alpha
Helix 146	AQ2	E	387	407	Right-handed alpha
Helix 147	AQ3	E	409	433	Right-handed alpha
Helix 148	AQ4	E	439	444	Right-handed alpha
Helix 149	AQ5	E	444	497	Right-handed alpha
Helix 150	AQ6	E	498	507	Right-handed alpha
Helix 151	AQ7	E	508	525	Right-handed alpha
Helix 152	AQ8	E	543	555	Right-handed alpha
Helix 153	AQ9	E	557	562	Right-handed alpha
Helix 154	AR1	E	567	580	Right-handed alpha
Helix 155	AR2	E	583	600	Right-handed alpha
Helix 156	AR3	E	619	633	Right-handed alpha
Helix 157	AR4	E	634	638	Right-handed 310
Helix 158	AR5	E	670	676	Right-handed alpha
Helix 159	AR6	E	687	691	Right-handed 310
Helix 160	AR7	E	692	704	Right-handed alpha
Helix 161	AR8	E	730	737	Right-handed alpha
Helix 162	AR9	E	745	758	Right-handed alpha
Helix 163	AS1	E	759	764	Right-handed alpha
Helix 164	AS2	E	775	795	Right-handed alpha
Helix 165	AS3	E	806	819	Right-handed alpha
Helix 166	AS4	E	825	830	Right-handed 310
Helix 167	AS5	E	836	846	Right-handed alpha
Helix 168	AS6	F	166	169	Right-handed 310
Helix 169	AS7	F	174	180	Right-handed alpha
Helix 170	AS8	F	189	202	Right-handed alpha
Helix 171	AS9	F	217	232	Right-handed alpha
Helix 172	AT1	F	235	239	Right-handed 310
Helix 173	AT2	F	259	274	Right-handed alpha
Helix 174	AT3	F	285	289	Right-handed 310
Helix 175	AT4	F	300	307	Right-handed alpha
Helix 176	AT5	F	318	329	Right-handed alpha
Helix 177	AT6	F	329	334	Right-handed alpha
Helix 178	AT7	F	344	364	Right-handed alpha
Helix 179	AT8	F	368	382	Right-handed alpha
Helix 180	AT9	F	387	407	Right-handed alpha
Helix 181	AU1	F	543	552	Right-handed alpha
Helix 182	AU2	F	567	580	Right-handed alpha
Helix 183	AU3	F	583	599	Right-handed alpha
Helix 184	AU4	F	619	633	Right-handed alpha
Helix 185	AU5	F	644	646	Right-handed 310
Helix 186	AU6	F	670	678	Right-handed alpha
Helix 187	AU7	F	687	691	Right-handed 310
Helix 188	AU8	F	692	699	Right-handed alpha
Helix 189	AU9	F	699	704	Right-handed alpha
Helix 190	AV1	F	730	735	Right-handed alpha
Helix 191	AV2	F	745	758	Right-handed alpha
Helix 192	AV3	F	759	765	Right-handed alpha
Helix 193	AV4	F	776	796	Right-handed alpha
Helix 194	AV5	F	806	819	Right-handed alpha
Helix 195	AV6	F	825	836	Right-handed alpha
Helix 196	AV7	F	836	847	Right-handed alpha

There are 17 sheets in PDB entry 5VY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	241	245	anti-parallel
Strand 3	A	278	282	parallel
Strand 4	A	311	317	parallel
Strand 5	A	207	212	parallel
Strand 6	A	335	339	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	367	first strand
Strand 2	A	539	540	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	642	first strand
Strand 2	A	683	686	parallel
Strand 3	A	723	727	parallel
Strand 4	A	609	614	parallel
Strand 5	A	768	772	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	173	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	278	283	parallel
Strand 4	B	312	317	parallel
Strand 5	B	210	212	parallel
Strand 6	B	338	339	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	367	first strand
Strand 2	B	539	540	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	639	642	first strand
Strand 2	B	681	686	parallel
Strand 3	B	721	727	parallel
Strand 4	B	609	613	parallel
Strand 5	B	768	771	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	173	first strand
Strand 2	C	242	245	anti-parallel
Strand 3	C	279	282	parallel
Strand 4	C	311	316	parallel
Strand 5	C	207	211	parallel
Strand 6	C	335	339	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	367	first strand
Strand 2	C	539	540	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	526	527	first strand
Strand 2	C	530	531	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	641	first strand
Strand 2	C	682	685	parallel
Strand 3	C	722	727	parallel
Strand 4	C	609	613	parallel
Strand 5	C	768	771	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	173	first strand
Strand 2	D	242	245	anti-parallel
Strand 3	D	279	282	parallel
Strand 4	D	312	317	parallel
Strand 5	D	207	212	parallel
Strand 6	D	335	339	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	638	642	first strand
Strand 2	D	681	686	parallel
Strand 3	D	721	726	parallel
Strand 4	D	609	614	parallel
Strand 5	D	768	772	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	173	first strand
Strand 2	E	241	245	anti-parallel
Strand 3	E	278	283	parallel
Strand 4	E	311	315	parallel
Strand 5	E	207	211	parallel
Strand 6	E	335	339	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	639	642	first strand
Strand 2	E	681	686	parallel
Strand 3	E	721	726	parallel
Strand 4	E	609	613	parallel
Strand 5	E	768	771	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	171	173	first strand
Strand 2	F	241	246	anti-parallel
Strand 3	F	278	282	parallel
Strand 4	F	311	317	parallel
Strand 5	F	207	212	parallel
Strand 6	F	335	340	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	366	367	first strand
Strand 2	F	539	540	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	639	642	first strand
Strand 2	F	682	686	parallel
Strand 3	F	722	727	parallel
Strand 4	F	608	613	parallel
Strand 5	F	768	771	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VY8