Analysis of interatomic Contacts of Structural Units in PDB entry:
5VY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VY9 entry

There are 7 chains in PDB entry 5VY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 6	GLU 884
B	GLN 6	GLU 884
C	GLN 6	GLU 884
D	GLN 6	GLU 884
E	GLN 6	GLU 884
F	GLN 6	GLU 884
P	UNK 1	UNK 28

There are237 helices in PDB entry 5VY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	25	Right-handed alpha
Helix 2	AA2	A	31	40	Right-handed alpha
Helix 3	AA3	A	53	58	Right-handed alpha
Helix 4	AA4	A	61	76	Right-handed alpha
Helix 5	AA5	A	88	107	Right-handed alpha
Helix 6	AA6	A	112	124	Right-handed alpha
Helix 7	AA7	A	136	145	Right-handed alpha
Helix 8	AA8	A	167	171	Right-handed alpha
Helix 9	AA9	A	174	180	Right-handed alpha
Helix 10	AB1	A	189	202	Right-handed alpha
Helix 11	AB2	A	217	231	Right-handed alpha
Helix 12	AB3	A	235	240	Right-handed alpha
Helix 13	AB4	A	259	272	Right-handed alpha
Helix 14	AB5	A	285	289	Right-handed 310
Helix 15	AB6	A	297	306	Right-handed 310
Helix 16	AB7	A	317	329	Right-handed alpha
Helix 17	AB8	A	330	333	Right-handed 310
Helix 18	AB9	A	344	364	Right-handed alpha
Helix 19	AC1	A	368	382	Right-handed alpha
Helix 20	AC2	A	387	406	Right-handed alpha
Helix 21	AC3	A	408	433	Right-handed alpha
Helix 22	AC4	A	439	444	Right-handed alpha
Helix 23	AC5	A	445	496	Right-handed alpha
Helix 24	AC6	A	498	507	Right-handed alpha
Helix 25	AC7	A	508	525	Right-handed alpha
Helix 26	AC8	A	541	555	Right-handed alpha
Helix 27	AC9	A	557	561	Right-handed 310
Helix 28	AD1	A	564	580	Right-handed alpha
Helix 29	AD2	A	583	599	Right-handed alpha
Helix 30	AD3	A	619	632	Right-handed alpha
Helix 31	AD4	A	634	638	Right-handed 310
Helix 32	AD5	A	670	678	Right-handed alpha
Helix 33	AD6	A	687	691	Right-handed 310
Helix 34	AD7	A	692	703	Right-handed alpha
Helix 35	AD8	A	730	735	Right-handed alpha
Helix 36	AD9	A	746	758	Right-handed alpha
Helix 37	AE1	A	759	764	Right-handed alpha
Helix 38	AE2	A	776	794	Right-handed alpha
Helix 39	AE3	A	806	817	Right-handed alpha
Helix 40	AE4	A	825	836	Right-handed alpha
Helix 41	AE5	A	836	846	Right-handed alpha
Helix 42	AE6	B	8	25	Right-handed alpha
Helix 43	AE7	B	31	40	Right-handed alpha
Helix 44	AE8	B	61	76	Right-handed alpha
Helix 45	AE9	B	89	106	Right-handed alpha
Helix 46	AF1	B	112	124	Right-handed alpha
Helix 47	AF2	B	136	146	Right-handed alpha
Helix 48	AF3	B	166	170	Right-handed 310
Helix 49	AF4	B	174	180	Right-handed alpha
Helix 50	AF5	B	189	201	Right-handed alpha
Helix 51	AF6	B	217	231	Right-handed alpha
Helix 52	AF7	B	235	240	Right-handed alpha
Helix 53	AF8	B	247	251	Right-handed 310
Helix 54	AF9	B	259	273	Right-handed alpha
Helix 55	AG1	B	287	289	Right-handed 310
Helix 56	AG2	B	301	307	Right-handed 310
Helix 57	AG3	B	318	329	Right-handed alpha
Helix 58	AG4	B	330	334	Right-handed alpha
Helix 59	AG5	B	344	364	Right-handed alpha
Helix 60	AG6	B	368	383	Right-handed alpha
Helix 61	AG7	B	387	410	Right-handed alpha
Helix 62	AG8	B	410	433	Right-handed alpha
Helix 63	AG9	B	439	443	Right-handed 310
Helix 64	AH1	B	444	496	Right-handed alpha
Helix 65	AH2	B	498	507	Right-handed alpha
Helix 66	AH3	B	508	525	Right-handed alpha
Helix 67	AH4	B	545	555	Right-handed alpha
Helix 68	AH5	B	556	561	Right-handed 310
Helix 69	AH6	B	562	567	Right-handed 310
Helix 70	AH7	B	571	580	Right-handed alpha
Helix 71	AH8	B	583	599	Right-handed alpha
Helix 72	AH9	B	619	633	Right-handed alpha
Helix 73	AI1	B	671	677	Right-handed alpha
Helix 74	AI2	B	687	691	Right-handed 310
Helix 75	AI3	B	692	699	Right-handed alpha
Helix 76	AI4	B	699	704	Right-handed alpha
Helix 77	AI5	B	730	735	Right-handed alpha
Helix 78	AI6	B	745	756	Right-handed alpha
Helix 79	AI7	B	759	764	Right-handed alpha
Helix 80	AI8	B	776	795	Right-handed alpha
Helix 81	AI9	B	807	818	Right-handed alpha
Helix 82	AJ1	B	826	845	Right-handed alpha
Helix 83	AJ2	C	8	25	Right-handed alpha
Helix 84	AJ3	C	31	40	Right-handed alpha
Helix 85	AJ4	C	53	58	Right-handed alpha
Helix 86	AJ5	C	61	74	Right-handed alpha
Helix 87	AJ6	C	89	107	Right-handed alpha
Helix 88	AJ7	C	112	124	Right-handed alpha
Helix 89	AJ8	C	136	145	Right-handed alpha
Helix 90	AJ9	C	166	169	Right-handed 310
Helix 91	AK1	C	174	180	Right-handed alpha
Helix 92	AK2	C	189	201	Right-handed alpha
Helix 93	AK3	C	217	231	Right-handed alpha
Helix 94	AK4	C	235	240	Right-handed alpha
Helix 95	AK5	C	259	274	Right-handed alpha
Helix 96	AK6	C	285	289	Right-handed 310
Helix 97	AK7	C	300	306	Right-handed alpha
Helix 98	AK8	C	318	326	Right-handed alpha
Helix 99	AK9	C	330	333	Right-handed 310
Helix 100	AL1	C	344	364	Right-handed alpha
Helix 101	AL2	C	368	383	Right-handed alpha
Helix 102	AL3	C	387	407	Right-handed alpha
Helix 103	AL4	C	543	555	Right-handed alpha
Helix 104	AL5	C	556	560	Right-handed 310
Helix 105	AL6	C	571	580	Right-handed alpha
Helix 106	AL7	C	583	599	Right-handed alpha
Helix 107	AL8	C	619	633	Right-handed alpha
Helix 108	AL9	C	671	678	Right-handed alpha
Helix 109	AM1	C	687	691	Right-handed 310
Helix 110	AM2	C	692	704	Right-handed alpha
Helix 111	AM3	C	730	735	Right-handed alpha
Helix 112	AM4	C	745	758	Right-handed alpha
Helix 113	AM5	C	759	765	Right-handed alpha
Helix 114	AM6	C	776	795	Right-handed alpha
Helix 115	AM7	C	806	818	Right-handed alpha
Helix 116	AM8	C	825	846	Right-handed alpha
Helix 117	AM9	D	8	25	Right-handed alpha
Helix 118	AN1	D	31	40	Right-handed alpha
Helix 119	AN2	D	61	76	Right-handed alpha
Helix 120	AN3	D	88	107	Right-handed alpha
Helix 121	AN4	D	112	124	Right-handed alpha
Helix 122	AN5	D	136	146	Right-handed alpha
Helix 123	AN6	D	166	169	Right-handed 310
Helix 124	AN7	D	174	180	Right-handed alpha
Helix 125	AN8	D	189	201	Right-handed alpha
Helix 126	AN9	D	217	231	Right-handed alpha
Helix 127	AO1	D	235	240	Right-handed alpha
Helix 128	AO2	D	257	262	Right-handed 310
Helix 129	AO3	D	264	272	Right-handed alpha
Helix 130	AO4	D	285	289	Right-handed 310
Helix 131	AO5	D	300	305	Right-handed alpha
Helix 132	AO6	D	318	327	Right-handed alpha
Helix 133	AO7	D	330	333	Right-handed 310
Helix 134	AO8	D	344	364	Right-handed alpha
Helix 135	AO9	D	368	383	Right-handed alpha
Helix 136	AP1	D	387	407	Right-handed alpha
Helix 137	AP2	D	541	555	Right-handed alpha
Helix 138	AP3	D	556	560	Right-handed 310
Helix 139	AP4	D	571	580	Right-handed alpha
Helix 140	AP5	D	583	599	Right-handed alpha
Helix 141	AP6	D	619	633	Right-handed alpha
Helix 142	AP7	D	650	654	Right-handed 310
Helix 143	AP8	D	671	678	Right-handed alpha
Helix 144	AP9	D	687	691	Right-handed 310
Helix 145	AQ1	D	692	704	Right-handed alpha
Helix 146	AQ2	D	730	735	Right-handed alpha
Helix 147	AQ3	D	745	757	Right-handed alpha
Helix 148	AQ4	D	759	764	Right-handed alpha
Helix 149	AQ5	D	776	794	Right-handed alpha
Helix 150	AQ6	D	806	818	Right-handed alpha
Helix 151	AQ7	D	825	846	Right-handed alpha
Helix 152	AQ8	E	8	25	Right-handed alpha
Helix 153	AQ9	E	31	39	Right-handed alpha
Helix 154	AR1	E	61	76	Right-handed alpha
Helix 155	AR2	E	88	106	Right-handed alpha
Helix 156	AR3	E	112	124	Right-handed alpha
Helix 157	AR4	E	136	147	Right-handed alpha
Helix 158	AR5	E	174	180	Right-handed alpha
Helix 159	AR6	E	189	201	Right-handed alpha
Helix 160	AR7	E	217	231	Right-handed alpha
Helix 161	AR8	E	235	240	Right-handed alpha
Helix 162	AR9	E	248	253	Right-handed alpha
Helix 163	AS1	E	259	272	Right-handed alpha
Helix 164	AS2	E	285	289	Right-handed 310
Helix 165	AS3	E	300	305	Right-handed alpha
Helix 166	AS4	E	318	329	Right-handed alpha
Helix 167	AS5	E	330	335	Right-handed alpha
Helix 168	AS6	E	344	364	Right-handed alpha
Helix 169	AS7	E	368	383	Right-handed alpha
Helix 170	AS8	E	387	408	Right-handed alpha
Helix 171	AS9	E	408	433	Right-handed alpha
Helix 172	AT1	E	439	444	Right-handed alpha
Helix 173	AT2	E	444	497	Right-handed alpha
Helix 174	AT3	E	502	507	Right-handed alpha
Helix 175	AT4	E	508	525	Right-handed alpha
Helix 176	AT5	E	543	555	Right-handed alpha
Helix 177	AT6	E	556	560	Right-handed 310
Helix 178	AT7	E	562	567	Right-handed 310
Helix 179	AT8	E	571	580	Right-handed alpha
Helix 180	AT9	E	583	599	Right-handed alpha
Helix 181	AU1	E	619	633	Right-handed alpha
Helix 182	AU2	E	634	638	Right-handed 310
Helix 183	AU3	E	671	678	Right-handed alpha
Helix 184	AU4	E	687	691	Right-handed 310
Helix 185	AU5	E	692	699	Right-handed alpha
Helix 186	AU6	E	699	704	Right-handed alpha
Helix 187	AU7	E	730	735	Right-handed alpha
Helix 188	AU8	E	745	758	Right-handed alpha
Helix 189	AU9	E	759	764	Right-handed alpha
Helix 190	AV1	E	776	795	Right-handed alpha
Helix 191	AV2	E	806	819	Right-handed alpha
Helix 192	AV3	E	825	836	Right-handed alpha
Helix 193	AV4	E	836	846	Right-handed alpha
Helix 194	AV5	F	8	25	Right-handed alpha
Helix 195	AV6	F	31	40	Right-handed alpha
Helix 196	AV7	F	53	59	Right-handed alpha
Helix 197	AV8	F	61	76	Right-handed alpha
Helix 198	AV9	F	88	107	Right-handed alpha
Helix 199	AW1	F	112	124	Right-handed alpha
Helix 200	AW2	F	137	146	Right-handed alpha
Helix 201	AW3	F	148	149	Right-handed 310
Helix 202	AW4	F	166	166	Right-handed 310
Helix 203	AW5	F	167	170	Right-handed alpha
Helix 204	AW6	F	174	181	Right-handed alpha
Helix 205	AW7	F	189	201	Right-handed alpha
Helix 206	AW8	F	217	231	Right-handed alpha
Helix 207	AW9	F	236	239	Right-handed 310
Helix 208	AX1	F	259	274	Right-handed alpha
Helix 209	AX2	F	285	287	Right-handed 310
Helix 210	AX3	F	288	293	Right-handed alpha
Helix 211	AX4	F	294	297	Right-handed 310
Helix 212	AX5	F	301	307	Right-handed alpha
Helix 213	AX6	F	318	328	Right-handed alpha
Helix 214	AX7	F	330	334	Right-handed alpha
Helix 215	AX8	F	344	364	Right-handed alpha
Helix 216	AX9	F	368	383	Right-handed alpha
Helix 217	AY1	F	387	407	Right-handed alpha
Helix 218	AY2	F	410	433	Right-handed alpha
Helix 219	AY3	F	435	438	Right-handed 310
Helix 220	AY4	F	439	444	Right-handed alpha
Helix 221	AY5	F	445	496	Right-handed alpha
Helix 222	AY6	F	498	507	Right-handed alpha
Helix 223	AY7	F	508	523	Right-handed alpha
Helix 224	AY8	F	543	555	Right-handed alpha
Helix 225	AY9	F	571	580	Right-handed alpha
Helix 226	AZ1	F	583	600	Right-handed alpha
Helix 227	AZ2	F	619	633	Right-handed alpha
Helix 228	AZ3	F	634	638	Right-handed 310
Helix 229	AZ4	F	671	678	Right-handed alpha
Helix 230	AZ5	F	689	691	Right-handed 310
Helix 231	AZ6	F	692	704	Right-handed alpha
Helix 232	AZ7	F	730	735	Right-handed alpha
Helix 233	AZ8	F	745	758	Right-handed alpha
Helix 234	AZ9	F	759	764	Right-handed alpha
Helix 235	BA1	F	776	794	Right-handed alpha
Helix 236	BA2	F	806	817	Right-handed alpha
Helix 237	BA3	F	825	846	Right-handed alpha

There are 17 sheets in PDB entry 5VY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	242	246	anti-parallel
Strand 3	A	279	283	parallel
Strand 4	A	312	316	parallel
Strand 5	A	207	211	parallel
Strand 6	A	335	339	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	642	first strand
Strand 2	A	681	686	parallel
Strand 3	A	721	727	parallel
Strand 4	A	609	613	parallel
Strand 5	A	768	771	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	803	first strand
Strand 2	A	853	855	parallel
Strand 3	A	877	878	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	173	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	278	285	parallel
Strand 4	B	312	317	parallel
Strand 5	B	207	212	parallel
Strand 6	B	335	339	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	639	642	first strand
Strand 2	B	681	686	parallel
Strand 3	B	721	727	parallel
Strand 4	B	608	613	parallel
Strand 5	B	768	771	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	856	858	first strand
Strand 2	B	876	878	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	173	first strand
Strand 2	C	242	246	anti-parallel
Strand 3	C	279	283	parallel
Strand 4	C	312	317	parallel
Strand 5	C	207	212	parallel
Strand 6	C	335	339	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	641	first strand
Strand 2	C	682	685	parallel
Strand 3	C	722	727	parallel
Strand 4	C	609	613	parallel
Strand 5	C	768	771	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	173	first strand
Strand 2	D	241	246	anti-parallel
Strand 3	D	278	283	parallel
Strand 4	D	312	317	parallel
Strand 5	D	207	212	parallel
Strand 6	D	335	340	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	639	641	first strand
Strand 2	D	682	685	parallel
Strand 3	D	722	727	parallel
Strand 4	D	609	613	parallel
Strand 5	D	768	771	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	856	857	first strand
Strand 2	D	875	876	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	173	first strand
Strand 2	E	242	246	anti-parallel
Strand 3	E	279	283	parallel
Strand 4	E	311	317	parallel
Strand 5	E	208	212	parallel
Strand 6	E	336	340	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	639	641	first strand
Strand 2	E	682	685	parallel
Strand 3	E	722	727	parallel
Strand 4	E	608	613	parallel
Strand 5	E	768	771	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	126	first strand
Strand 2	F	132	133	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	171	173	first strand
Strand 2	F	241	246	anti-parallel
Strand 3	F	278	282	parallel
Strand 4	F	311	317	parallel
Strand 5	F	207	212	parallel
Strand 6	F	335	339	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	366	367	first strand
Strand 2	F	539	540	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	639	641	first strand
Strand 2	F	682	687	parallel
Strand 3	F	722	727	parallel
Strand 4	F	609	613	parallel
Strand 5	F	768	771	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VY9