Analysis of interatomic Contacts of Structural Units in PDB entry:
5VYA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VYA entry

There are 7 chains in PDB entry 5VYA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 165	GLU 884
B	GLU 165	GLU 884
C	GLU 165	GLU 884
D	GLU 165	GLU 884
E	GLU 165	GLU 884
F	GLU 165	GLU 884
P	UNK 1	UNK 28

There are202 helices in PDB entry 5VYA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	166	171	Right-handed alpha
Helix 2	AA2	A	174	180	Right-handed alpha
Helix 3	AA3	A	189	201	Right-handed alpha
Helix 4	AA4	A	217	231	Right-handed alpha
Helix 5	AA5	A	235	239	Right-handed 310
Helix 6	AA6	A	247	252	Right-handed 310
Helix 7	AA7	A	259	274	Right-handed alpha
Helix 8	AA8	A	285	289	Right-handed 310
Helix 9	AA9	A	298	306	Right-handed 310
Helix 10	AB1	A	318	329	Right-handed alpha
Helix 11	AB2	A	330	334	Right-handed 310
Helix 12	AB3	A	344	364	Right-handed alpha
Helix 13	AB4	A	368	383	Right-handed alpha
Helix 14	AB5	A	387	410	Right-handed alpha
Helix 15	AB6	A	543	554	Right-handed alpha
Helix 16	AB7	A	556	560	Right-handed 310
Helix 17	AB8	A	571	580	Right-handed alpha
Helix 18	AB9	A	583	598	Right-handed alpha
Helix 19	AC1	A	599	601	Right-handed 310
Helix 20	AC2	A	619	633	Right-handed alpha
Helix 21	AC3	A	644	646	Right-handed 310
Helix 22	AC4	A	650	657	Right-handed alpha
Helix 23	AC5	A	671	676	Right-handed alpha
Helix 24	AC6	A	687	691	Right-handed 310
Helix 25	AC7	A	692	699	Right-handed alpha
Helix 26	AC8	A	699	704	Right-handed alpha
Helix 27	AC9	A	730	735	Right-handed alpha
Helix 28	AD1	A	745	758	Right-handed alpha
Helix 29	AD2	A	759	764	Right-handed alpha
Helix 30	AD3	A	775	795	Right-handed alpha
Helix 31	AD4	A	806	817	Right-handed alpha
Helix 32	AD5	A	825	835	Right-handed alpha
Helix 33	AD6	A	835	846	Right-handed alpha
Helix 34	AD7	B	165	169	Right-handed 310
Helix 35	AD8	B	174	180	Right-handed alpha
Helix 36	AD9	B	189	201	Right-handed alpha
Helix 37	AE1	B	217	231	Right-handed alpha
Helix 38	AE2	B	235	240	Right-handed alpha
Helix 39	AE3	B	248	253	Right-handed alpha
Helix 40	AE4	B	259	274	Right-handed alpha
Helix 41	AE5	B	285	290	Right-handed 310
Helix 42	AE6	B	300	306	Right-handed alpha
Helix 43	AE7	B	318	326	Right-handed alpha
Helix 44	AE8	B	329	335	Right-handed alpha
Helix 45	AE9	B	344	364	Right-handed alpha
Helix 46	AF1	B	368	383	Right-handed alpha
Helix 47	AF2	B	387	409	Right-handed alpha
Helix 48	AF3	B	542	555	Right-handed alpha
Helix 49	AF4	B	556	561	Right-handed 310
Helix 50	AF5	B	562	564	Right-handed 310
Helix 51	AF6	B	565	580	Right-handed alpha
Helix 52	AF7	B	583	599	Right-handed alpha
Helix 53	AF8	B	619	633	Right-handed alpha
Helix 54	AF9	B	634	638	Right-handed 310
Helix 55	AG1	B	644	646	Right-handed 310
Helix 56	AG2	B	651	657	Right-handed alpha
Helix 57	AG3	B	671	676	Right-handed alpha
Helix 58	AG4	B	687	691	Right-handed 310
Helix 59	AG5	B	692	703	Right-handed alpha
Helix 60	AG6	B	730	735	Right-handed alpha
Helix 61	AG7	B	745	756	Right-handed alpha
Helix 62	AG8	B	759	764	Right-handed alpha
Helix 63	AG9	B	776	795	Right-handed alpha
Helix 64	AH1	B	808	817	Right-handed alpha
Helix 65	AH2	B	825	836	Right-handed alpha
Helix 66	AH3	B	836	846	Right-handed alpha
Helix 67	AH4	C	165	169	Right-handed 310
Helix 68	AH5	C	174	180	Right-handed alpha
Helix 69	AH6	C	189	201	Right-handed alpha
Helix 70	AH7	C	217	231	Right-handed alpha
Helix 71	AH8	C	248	253	Right-handed alpha
Helix 72	AH9	C	259	274	Right-handed alpha
Helix 73	AI1	C	285	290	Right-handed 310
Helix 74	AI2	C	294	298	Right-handed 310
Helix 75	AI3	C	301	306	Right-handed alpha
Helix 76	AI4	C	317	329	Right-handed alpha
Helix 77	AI5	C	330	335	Right-handed alpha
Helix 78	AI6	C	344	364	Right-handed alpha
Helix 79	AI7	C	368	383	Right-handed alpha
Helix 80	AI8	C	387	410	Right-handed alpha
Helix 81	AI9	C	542	555	Right-handed alpha
Helix 82	AJ1	C	556	561	Right-handed 310
Helix 83	AJ2	C	562	564	Right-handed 310
Helix 84	AJ3	C	565	580	Right-handed alpha
Helix 85	AJ4	C	583	599	Right-handed alpha
Helix 86	AJ5	C	619	633	Right-handed alpha
Helix 87	AJ6	C	634	638	Right-handed 310
Helix 88	AJ7	C	647	657	Right-handed alpha
Helix 89	AJ8	C	671	676	Right-handed alpha
Helix 90	AJ9	C	687	691	Right-handed 310
Helix 91	AK1	C	692	703	Right-handed alpha
Helix 92	AK2	C	730	735	Right-handed alpha
Helix 93	AK3	C	745	758	Right-handed alpha
Helix 94	AK4	C	759	764	Right-handed alpha
Helix 95	AK5	C	776	794	Right-handed alpha
Helix 96	AK6	C	806	818	Right-handed alpha
Helix 97	AK7	C	820	824	Right-handed 310
Helix 98	AK8	C	825	836	Right-handed alpha
Helix 99	AK9	C	836	846	Right-handed alpha
Helix 100	AL1	D	166	170	Right-handed alpha
Helix 101	AL2	D	174	180	Right-handed alpha
Helix 102	AL3	D	189	201	Right-handed alpha
Helix 103	AL4	D	217	231	Right-handed alpha
Helix 104	AL5	D	235	240	Right-handed alpha
Helix 105	AL6	D	248	253	Right-handed alpha
Helix 106	AL7	D	259	274	Right-handed alpha
Helix 107	AL8	D	285	291	Right-handed 310
Helix 108	AL9	D	294	298	Right-handed 310
Helix 109	AM1	D	301	306	Right-handed alpha
Helix 110	AM2	D	318	328	Right-handed alpha
Helix 111	AM3	D	329	335	Right-handed alpha
Helix 112	AM4	D	344	364	Right-handed alpha
Helix 113	AM5	D	368	383	Right-handed alpha
Helix 114	AM6	D	387	409	Right-handed alpha
Helix 115	AM7	D	542	555	Right-handed alpha
Helix 116	AM8	D	556	560	Right-handed 310
Helix 117	AM9	D	562	564	Right-handed 310
Helix 118	AN1	D	565	578	Right-handed alpha
Helix 119	AN2	D	583	599	Right-handed alpha
Helix 120	AN3	D	619	633	Right-handed alpha
Helix 121	AN4	D	634	638	Right-handed 310
Helix 122	AN5	D	642	646	Right-handed 310
Helix 123	AN6	D	650	657	Right-handed alpha
Helix 124	AN7	D	670	678	Right-handed alpha
Helix 125	AN8	D	693	703	Right-handed alpha
Helix 126	AN9	D	730	735	Right-handed alpha
Helix 127	AO1	D	745	758	Right-handed alpha
Helix 128	AO2	D	759	764	Right-handed alpha
Helix 129	AO3	D	776	795	Right-handed alpha
Helix 130	AO4	D	808	818	Right-handed alpha
Helix 131	AO5	D	820	824	Right-handed 310
Helix 132	AO6	D	825	836	Right-handed alpha
Helix 133	AO7	D	836	846	Right-handed alpha
Helix 134	AO8	E	166	170	Right-handed alpha
Helix 135	AO9	E	174	180	Right-handed alpha
Helix 136	AP1	E	189	201	Right-handed alpha
Helix 137	AP2	E	217	231	Right-handed alpha
Helix 138	AP3	E	235	240	Right-handed alpha
Helix 139	AP4	E	248	253	Right-handed alpha
Helix 140	AP5	E	259	274	Right-handed alpha
Helix 141	AP6	E	285	291	Right-handed 310
Helix 142	AP7	E	294	298	Right-handed 310
Helix 143	AP8	E	301	307	Right-handed alpha
Helix 144	AP9	E	317	322	Right-handed alpha
Helix 145	AQ1	E	323	329	Right-handed alpha
Helix 146	AQ2	E	329	335	Right-handed alpha
Helix 147	AQ3	E	344	364	Right-handed alpha
Helix 148	AQ4	E	368	383	Right-handed alpha
Helix 149	AQ5	E	387	410	Right-handed alpha
Helix 150	AQ6	E	542	555	Right-handed alpha
Helix 151	AQ7	E	556	561	Right-handed 310
Helix 152	AQ8	E	562	564	Right-handed 310
Helix 153	AQ9	E	565	571	Right-handed alpha
Helix 154	AR1	E	571	577	Right-handed alpha
Helix 155	AR2	E	583	599	Right-handed alpha
Helix 156	AR3	E	619	633	Right-handed alpha
Helix 157	AR4	E	634	638	Right-handed 310
Helix 158	AR5	E	650	656	Right-handed alpha
Helix 159	AR6	E	670	676	Right-handed alpha
Helix 160	AR7	E	687	691	Right-handed 310
Helix 161	AR8	E	692	703	Right-handed alpha
Helix 162	AR9	E	730	735	Right-handed alpha
Helix 163	AS1	E	745	756	Right-handed alpha
Helix 164	AS2	E	759	765	Right-handed alpha
Helix 165	AS3	E	776	794	Right-handed alpha
Helix 166	AS4	E	808	818	Right-handed alpha
Helix 167	AS5	E	820	825	Right-handed 310
Helix 168	AS6	E	826	836	Right-handed alpha
Helix 169	AS7	E	836	846	Right-handed alpha
Helix 170	AS8	F	166	171	Right-handed alpha
Helix 171	AS9	F	174	180	Right-handed alpha
Helix 172	AT1	F	189	201	Right-handed alpha
Helix 173	AT2	F	217	231	Right-handed alpha
Helix 174	AT3	F	235	240	Right-handed alpha
Helix 175	AT4	F	248	253	Right-handed alpha
Helix 176	AT5	F	259	272	Right-handed alpha
Helix 177	AT6	F	285	289	Right-handed 310
Helix 178	AT7	F	300	306	Right-handed alpha
Helix 179	AT8	F	318	329	Right-handed alpha
Helix 180	AT9	F	329	334	Right-handed alpha
Helix 181	AU1	F	344	364	Right-handed alpha
Helix 182	AU2	F	368	383	Right-handed alpha
Helix 183	AU3	F	387	408	Right-handed alpha
Helix 184	AU4	F	545	555	Right-handed alpha
Helix 185	AU5	F	556	560	Right-handed 310
Helix 186	AU6	F	569	580	Right-handed alpha
Helix 187	AU7	F	583	596	Right-handed alpha
Helix 188	AU8	F	597	601	Right-handed 310
Helix 189	AU9	F	621	632	Right-handed alpha
Helix 190	AV1	F	634	638	Right-handed 310
Helix 191	AV2	F	652	657	Right-handed alpha
Helix 192	AV3	F	671	676	Right-handed alpha
Helix 193	AV4	F	687	691	Right-handed 310
Helix 194	AV5	F	692	703	Right-handed alpha
Helix 195	AV6	F	730	735	Right-handed alpha
Helix 196	AV7	F	743	758	Right-handed alpha
Helix 197	AV8	F	759	764	Right-handed alpha
Helix 198	AV9	F	776	795	Right-handed alpha
Helix 199	AW1	F	806	818	Right-handed alpha
Helix 200	AW2	F	820	824	Right-handed 310
Helix 201	AW3	F	825	836	Right-handed alpha
Helix 202	AW4	F	836	846	Right-handed alpha

There are 24 sheets in PDB entry 5VYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	242	245	anti-parallel
Strand 3	A	279	282	parallel
Strand 4	A	312	317	parallel
Strand 5	A	208	212	parallel
Strand 6	A	336	339	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	367	first strand
Strand 2	A	539	540	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	642	first strand
Strand 2	A	683	686	parallel
Strand 3	A	723	727	parallel
Strand 4	A	609	614	parallel
Strand 5	A	768	772	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	709	710	first strand
Strand 2	A	714	715	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	241	246	anti-parallel
Strand 3	B	278	283	parallel
Strand 4	B	312	317	parallel
Strand 5	B	208	212	parallel
Strand 6	B	336	339	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	367	first strand
Strand 2	B	540	541	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	639	642	first strand
Strand 2	B	682	686	parallel
Strand 3	B	722	727	parallel
Strand 4	B	608	613	parallel
Strand 5	B	768	771	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	709	710	first strand
Strand 2	B	714	715	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	802	804	first strand
Strand 2	B	853	857	parallel
Strand 3	B	875	877	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	173	first strand
Strand 2	C	242	246	anti-parallel
Strand 3	C	279	283	parallel
Strand 4	C	312	316	parallel
Strand 5	C	208	211	parallel
Strand 6	C	336	339	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	367	first strand
Strand 2	C	540	541	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	641	first strand
Strand 2	C	682	685	parallel
Strand 3	C	722	727	parallel
Strand 4	C	608	613	parallel
Strand 5	C	768	771	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	802	804	first strand
Strand 2	C	853	857	parallel
Strand 3	C	875	877	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	173	first strand
Strand 2	D	242	246	anti-parallel
Strand 3	D	279	283	parallel
Strand 4	D	312	317	parallel
Strand 5	D	208	212	parallel
Strand 6	D	336	339	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	366	367	first strand
Strand 2	D	540	541	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	639	641	first strand
Strand 2	D	682	685	parallel
Strand 3	D	722	727	parallel
Strand 4	D	608	613	parallel
Strand 5	D	768	771	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	802	804	first strand
Strand 2	D	853	857	parallel
Strand 3	D	875	877	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	173	first strand
Strand 2	E	241	246	anti-parallel
Strand 3	E	278	283	parallel
Strand 4	E	312	316	parallel
Strand 5	E	208	211	parallel
Strand 6	E	336	339	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	366	367	first strand
Strand 2	E	540	541	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	639	641	first strand
Strand 2	E	682	685	parallel
Strand 3	E	722	727	parallel
Strand 4	E	608	613	parallel
Strand 5	E	768	771	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	802	804	first strand
Strand 2	E	853	857	parallel
Strand 3	E	875	877	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	172	173	first strand
Strand 2	F	242	245	anti-parallel
Strand 3	F	279	283	parallel
Strand 4	F	312	317	parallel
Strand 5	F	207	212	parallel
Strand 6	F	335	339	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	366	367	first strand
Strand 2	F	539	540	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	639	641	first strand
Strand 2	F	682	685	parallel
Strand 3	F	722	726	parallel
Strand 4	F	608	614	parallel
Strand 5	F	768	772	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VYA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VYA