Analysis of interatomic Contacts of Structural Units in PDB entry:
5VYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VYE entry

There are 4 chains in PDB entry 5VYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ALA 346
B
 ASP 3ALA 346
C
 SER 5ALA 346
D
 SER 5ALA 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 5VYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
17 28Right-handed alpha
Helix 3
AA3
A
38 53Right-handed alpha
Helix 4
AA4
A
63 76Right-handed alpha
Helix 5
AA5
A
88 93Right-handed alpha
Helix 6
AA6
A
96 103Right-handed alpha
Helix 7
AA7
A
118 128Right-handed alpha
Helix 8
AA8
A
153 167Right-handed alpha
Helix 9
AA9
A
177 186Right-handed alpha
Helix 10
AB1
A
188 193Right-handed alpha
Helix 11
AB2
A
194 197Right-handed 310
Helix 12
AB3
A
206 209Right-handed 310
Helix 13
AB4
A
220 225Right-handed 310
Helix 14
AB5
A
226 234Right-handed alpha
Helix 15
AB6
A
241 253Right-handed alpha
Helix 16
AB7
A
255 274Right-handed alpha
Helix 17
AB8
A
297 299Right-handed 310
Helix 18
AB9
A
300 305Right-handed alpha
Helix 19
AC1
A
329 345Right-handed alpha
Helix 20
AC2
B
17 28Right-handed alpha
Helix 21
AC3
B
38 53Right-handed alpha
Helix 22
AC4
B
63 75Right-handed alpha
Helix 23
AC5
B
88 93Right-handed alpha
Helix 24
AC6
B
96 103Right-handed alpha
Helix 25
AC7
B
118 128Right-handed alpha
Helix 26
AC8
B
153 167Right-handed alpha
Helix 27
AC9
B
177 186Right-handed alpha
Helix 28
AD1
B
188 193Right-handed alpha
Helix 29
AD2
B
194 197Right-handed 310
Helix 30
AD3
B
206 209Right-handed 310
Helix 31
AD4
B
220 225Right-handed 310
Helix 32
AD5
B
226 234Right-handed alpha
Helix 33
AD6
B
241 253Right-handed alpha
Helix 34
AD7
B
255 276Right-handed alpha
Helix 35
AD8
B
299 306Right-handed alpha
Helix 36
AD9
B
307 309Right-handed 310
Helix 37
AE1
B
329 346Right-handed alpha
Helix 38
AE2
C
17 28Right-handed alpha
Helix 39
AE3
C
38 53Right-handed alpha
Helix 40
AE4
C
63 75Right-handed alpha
Helix 41
AE5
C
88 93Right-handed alpha
Helix 42
AE6
C
96 103Right-handed alpha
Helix 43
AE7
C
118 127Right-handed alpha
Helix 44
AE8
C
153 168Right-handed alpha
Helix 45
AE9
C
177 185Right-handed alpha
Helix 46
AF1
C
188 193Right-handed alpha
Helix 47
AF2
C
194 197Right-handed 310
Helix 48
AF3
C
206 209Right-handed 310
Helix 49
AF4
C
220 225Right-handed 310
Helix 50
AF5
C
226 234Right-handed alpha
Helix 51
AF6
C
241 253Right-handed alpha
Helix 52
AF7
C
255 276Right-handed alpha
Helix 53
AF8
C
299 306Right-handed alpha
Helix 54
AF9
C
329 346Right-handed alpha
Helix 55
AG1
D
17 28Right-handed alpha
Helix 56
AG2
D
38 53Right-handed alpha
Helix 57
AG3
D
63 74Right-handed alpha
Helix 58
AG4
D
88 93Right-handed alpha
Helix 59
AG5
D
96 103Right-handed alpha
Helix 60
AG6
D
118 129Right-handed alpha
Helix 61
AG7
D
153 167Right-handed alpha
Helix 62
AG8
D
177 186Right-handed alpha
Helix 63
AG9
D
189 197Right-handed 310
Helix 64
AH1
D
206 209Right-handed 310
Helix 65
AH2
D
220 225Right-handed 310
Helix 66
AH3
D
226 234Right-handed alpha
Helix 67
AH4
D
241 253Right-handed alpha
Helix 68
AH5
D
255 276Right-handed alpha
Helix 69
AH6
D
299 308Right-handed alpha
Helix 70
AH7
D
329 346Right-handed alpha
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There are 11 sheets in PDB entry 5VYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
214 218anti-parallel
Strand 3
A
200 204anti-parallel
Strand 4
A
170 175parallel
Strand 5
A
136 143parallel
Strand 6
A
80 85parallel
Strand 7
A
107 110parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
116 117anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
291 295anti-parallel
Strand 3
A
319 323anti-parallel
Strand 4
A
312 313anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
214 218anti-parallel
Strand 3
B
200 204anti-parallel
Strand 4
B
170 175parallel
Strand 5
B
136 143parallel
Strand 6
B
80 85parallel
Strand 7
B
107 110parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 283first strand
Strand 2
B
291 295anti-parallel
Strand 3
B
319 323anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 61first strand
Strand 2
C
214 218anti-parallel
Strand 3
C
200 204anti-parallel
Strand 4
C
170 175parallel
Strand 5
C
136 143parallel
Strand 6
C
80 85parallel
Strand 7
C
107 110parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 113first strand
Strand 2
C
116 117anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
282 283first strand
Strand 2
C
291 295anti-parallel
Strand 3
C
319 323anti-parallel
Strand 4
C
312 313anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 61first strand
Strand 2
D
214 218anti-parallel
Strand 3
D
200 204anti-parallel
Strand 4
D
170 175parallel
Strand 5
D
136 143parallel
Strand 6
D
80 84parallel
Strand 7
D
106 109parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
112 113first strand
Strand 2
D
116 117anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
282 283first strand
Strand 2
D
291 295anti-parallel
Strand 3
D
319 323anti-parallel
Strand 4
D
312 314anti-parallel
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