Analysis of interatomic Contacts of Structural Units in PDB entry:
5VYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VYJ entry

There are 2 chains in PDB entry 5VYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 35GLY 970
B
 GLU 36TYR 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are180 helices in PDB entry 5VYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 54Right-handed alpha
Helix 2
AA2
A
54 73Right-handed alpha
Helix 3
AA3
A
77 90Right-handed alpha
Helix 4
AA4
A
91 123Right-handed alpha
Helix 5
AA5
A
142 153Right-handed alpha
Helix 6
AA6
A
157 167Right-handed alpha
Helix 7
AA7
A
183 200Right-handed alpha
Helix 8
AA8
A
206 226Right-handed alpha
Helix 9
AA9
A
236 251Right-handed alpha
Helix 10
AB1
A
251 269Right-handed alpha
Helix 11
AB2
A
300 330Right-handed alpha
Helix 12
AB3
A
336 349Right-handed alpha
Helix 13
AB4
A
359 364Right-handed alpha
Helix 14
AB5
A
369 395Right-handed alpha
Helix 15
AB6
A
401 405Right-handed 310
Helix 16
AB7
A
408 426Right-handed alpha
Helix 17
AB8
A
428 433Right-handed alpha
Helix 18
AB9
A
434 447Right-handed alpha
Helix 19
AC1
A
448 450Right-handed 310
Helix 20
AC2
A
459 473Right-handed alpha
Helix 21
AC3
A
477 481Right-handed 310
Helix 22
AC4
A
482 496Right-handed alpha
Helix 23
AC5
A
508 524Right-handed alpha
Helix 24
AC6
A
525 527Right-handed 310
Helix 25
AC7
A
539 552Right-handed alpha
Helix 26
AC8
A
567 583Right-handed alpha
Helix 27
AC9
A
584 592Right-handed alpha
Helix 28
AD1
A
601 608Right-handed alpha
Helix 29
AD2
A
609 631Right-handed alpha
Helix 30
AD3
A
644 648Right-handed 310
Helix 31
AD4
A
651 658Right-handed alpha
Helix 32
AD5
A
675 682Right-handed alpha
Helix 33
AD6
A
683 704Right-handed alpha
Helix 34
AD7
A
710 733Right-handed alpha
Helix 35
AD8
A
737 746Right-handed alpha
Helix 36
AD9
A
747 755Right-handed 310
Helix 37
AE1
A
773 784Right-handed alpha
Helix 38
AE2
A
787 792Right-handed alpha
Helix 39
AE3
A
793 805Right-handed alpha
Helix 40
AE4
A
808 819Right-handed alpha
Helix 41
AE5
A
819 835Right-handed alpha
Helix 42
AE6
A
837 848Right-handed alpha
Helix 43
AE7
A
853 876Right-handed alpha
Helix 44
AE8
A
886 914Right-handed alpha
Helix 45
AE9
A
938 942Right-handed 310
Helix 46
AF1
A
950 966Right-handed alpha
Helix 47
AF2
B
37 54Right-handed alpha
Helix 48
AF3
B
56 75Right-handed alpha
Helix 49
AF4
B
78 88Right-handed alpha
Helix 50
AF5
B
91 123Right-handed alpha
Helix 51
AF6
B
142 153Right-handed alpha
Helix 52
AF7
B
157 167Right-handed alpha
Helix 53
AF8
B
183 201Right-handed alpha
Helix 54
AF9
B
206 226Right-handed alpha
Helix 55
AG1
B
236 251Right-handed alpha
Helix 56
AG2
B
251 269Right-handed alpha
Helix 57
AG3
B
300 330Right-handed alpha
Helix 58
AG4
B
336 349Right-handed alpha
Helix 59
AG5
B
360 365Right-handed alpha
Helix 60
AG6
B
369 395Right-handed alpha
Helix 61
AG7
B
408 426Right-handed alpha
Helix 62
AG8
B
428 433Right-handed alpha
Helix 63
AG9
B
434 447Right-handed alpha
Helix 64
AH1
B
459 473Right-handed alpha
Helix 65
AH2
B
482 496Right-handed alpha
Helix 66
AH3
B
508 524Right-handed alpha
Helix 67
AH4
B
525 527Right-handed 310
Helix 68
AH5
B
539 552Right-handed alpha
Helix 69
AH6
B
567 573Right-handed alpha
Helix 70
AH7
B
573 583Right-handed alpha
Helix 71
AH8
B
584 592Right-handed alpha
Helix 72
AH9
B
603 608Right-handed alpha
Helix 73
AI1
B
609 631Right-handed alpha
Helix 74
AI2
B
644 648Right-handed 310
Helix 75
AI3
B
651 658Right-handed alpha
Helix 76
AI4
B
674 682Right-handed alpha
Helix 77
AI5
B
683 704Right-handed alpha
Helix 78
AI6
B
710 733Right-handed alpha
Helix 79
AI7
B
737 746Right-handed alpha
Helix 80
AI8
B
747 755Right-handed 310
Helix 81
AI9
B
773 784Right-handed alpha
Helix 82
AJ1
B
787 805Right-handed alpha
Helix 83
AJ2
B
808 819Right-handed alpha
Helix 84
AJ3
B
819 835Right-handed alpha
Helix 85
AJ4
B
837 849Right-handed alpha
Helix 86
AJ5
B
850 852Right-handed 310
Helix 87
AJ6
B
853 876Right-handed alpha
Helix 88
AJ7
B
884 914Right-handed alpha
Helix 89
AJ8
B
950 967Right-handed alpha
Helix 90
AJ9
C
37 54Right-handed alpha
Helix 91
AK1
C
54 75Right-handed alpha
Helix 92
AK2
C
77 90Right-handed alpha
Helix 93
AK3
C
91 123Right-handed alpha
Helix 94
AK4
C
142 153Right-handed alpha
Helix 95
AK5
C
157 167Right-handed alpha
Helix 96
AK6
C
183 201Right-handed alpha
Helix 97
AK7
C
206 226Right-handed alpha
Helix 98
AK8
C
236 251Right-handed alpha
Helix 99
AK9
C
251 269Right-handed alpha
Helix 100
AL1
C
300 330Right-handed alpha
Helix 101
AL2
C
336 349Right-handed alpha
Helix 102
AL3
C
358 364Right-handed alpha
Helix 103
AL4
C
369 395Right-handed alpha
Helix 104
AL5
C
401 405Right-handed 310
Helix 105
AL6
C
408 426Right-handed alpha
Helix 106
AL7
C
428 433Right-handed alpha
Helix 107
AL8
C
434 447Right-handed alpha
Helix 108
AL9
C
459 473Right-handed alpha
Helix 109
AM1
C
482 496Right-handed alpha
Helix 110
AM2
C
508 524Right-handed alpha
Helix 111
AM3
C
525 527Right-handed 310
Helix 112
AM4
C
539 552Right-handed alpha
Helix 113
AM5
C
567 573Right-handed alpha
Helix 114
AM6
C
573 584Right-handed alpha
Helix 115
AM7
C
584 592Right-handed alpha
Helix 116
AM8
C
603 608Right-handed alpha
Helix 117
AM9
C
609 631Right-handed alpha
Helix 118
AN1
C
644 648Right-handed 310
Helix 119
AN2
C
651 658Right-handed alpha
Helix 120
AN3
C
674 682Right-handed alpha
Helix 121
AN4
C
683 704Right-handed alpha
Helix 122
AN5
C
710 733Right-handed alpha
Helix 123
AN6
C
737 746Right-handed alpha
Helix 124
AN7
C
747 755Right-handed 310
Helix 125
AN8
C
773 784Right-handed alpha
Helix 126
AN9
C
787 792Right-handed alpha
Helix 127
AO1
C
793 805Right-handed alpha
Helix 128
AO2
C
808 819Right-handed alpha
Helix 129
AO3
C
819 835Right-handed alpha
Helix 130
AO4
C
837 849Right-handed alpha
Helix 131
AO5
C
853 876Right-handed alpha
Helix 132
AO6
C
889 914Right-handed alpha
Helix 133
AO7
C
938 942Right-handed 310
Helix 134
AO8
C
950 966Right-handed alpha
Helix 135
AO9
D
37 54Right-handed alpha
Helix 136
AP1
D
54 75Right-handed alpha
Helix 137
AP2
D
76 90Right-handed alpha
Helix 138
AP3
D
91 124Right-handed alpha
Helix 139
AP4
D
142 153Right-handed alpha
Helix 140
AP5
D
157 167Right-handed alpha
Helix 141
AP6
D
183 201Right-handed alpha
Helix 142
AP7
D
206 226Right-handed alpha
Helix 143
AP8
D
236 251Right-handed alpha
Helix 144
AP9
D
251 269Right-handed alpha
Helix 145
AQ1
D
300 330Right-handed alpha
Helix 146
AQ2
D
336 349Right-handed alpha
Helix 147
AQ3
D
358 365Right-handed alpha
Helix 148
AQ4
D
369 395Right-handed alpha
Helix 149
AQ5
D
401 405Right-handed 310
Helix 150
AQ6
D
408 426Right-handed alpha
Helix 151
AQ7
D
428 433Right-handed alpha
Helix 152
AQ8
D
434 447Right-handed alpha
Helix 153
AQ9
D
459 473Right-handed alpha
Helix 154
AR1
D
477 481Right-handed 310
Helix 155
AR2
D
482 496Right-handed alpha
Helix 156
AR3
D
508 524Right-handed alpha
Helix 157
AR4
D
525 527Right-handed 310
Helix 158
AR5
D
539 552Right-handed alpha
Helix 159
AR6
D
567 582Right-handed alpha
Helix 160
AR7
D
584 592Right-handed alpha
Helix 161
AR8
D
601 609Right-handed alpha
Helix 162
AR9
D
609 632Right-handed alpha
Helix 163
AS1
D
644 648Right-handed 310
Helix 164
AS2
D
651 659Right-handed alpha
Helix 165
AS3
D
674 682Right-handed alpha
Helix 166
AS4
D
683 704Right-handed alpha
Helix 167
AS5
D
710 733Right-handed alpha
Helix 168
AS6
D
737 746Right-handed alpha
Helix 169
AS7
D
748 755Right-handed 310
Helix 170
AS8
D
767 772Right-handed 310
Helix 171
AS9
D
773 784Right-handed alpha
Helix 172
AT1
D
787 792Right-handed alpha
Helix 173
AT2
D
793 805Right-handed alpha
Helix 174
AT3
D
808 819Right-handed alpha
Helix 175
AT4
D
819 834Right-handed alpha
Helix 176
AT5
D
837 849Right-handed alpha
Helix 177
AT6
D
853 876Right-handed alpha
Helix 178
AT7
D
884 914Right-handed alpha
Helix 179
AT8
D
938 942Right-handed 310
Helix 180
AT9
D
950 966Right-handed alpha
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There are 4 sheets in PDB entry 5VYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 175first strand
Strand 2
A
283 287parallel
Strand 3
A
452 458parallel
Strand 4
A
529 535parallel
Strand 5
A
561 565parallel
Strand 6
A
594 600parallel
Strand 7
A
634 640parallel
Strand 8
A
668 673parallel
Strand 9
A
170 175parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 175first strand
Strand 2
B
283 287parallel
Strand 3
B
452 458parallel
Strand 4
B
529 535parallel
Strand 5
B
561 565parallel
Strand 6
B
594 600parallel
Strand 7
B
634 640parallel
Strand 8
B
667 673parallel
Strand 9
B
169 175parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 175first strand
Strand 2
C
283 287parallel
Strand 3
C
452 458parallel
Strand 4
C
529 535parallel
Strand 5
C
561 565parallel
Strand 6
C
594 600parallel
Strand 7
C
634 640parallel
Strand 8
C
667 673parallel
Strand 9
C
169 175parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
170 175first strand
Strand 2
D
283 287parallel
Strand 3
D
452 458parallel
Strand 4
D
529 535parallel
Strand 5
D
561 565parallel
Strand 6
D
594 600parallel
Strand 7
D
634 640parallel
Strand 8
D
668 673parallel
Strand 9
D
170 175parallel
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