Analysis of interatomic Contacts of Structural Units in PDB entry:
5VYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VYK entry

There are 2 chains in PDB entry 5VYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 33GLY 1104
C
 ALA 33ASN 1105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5VYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 62Right-handed alpha
Helix 2
AA2
A
66 94Right-handed alpha
Helix 3
AA3
A
100 105Right-handed alpha
Helix 4
AA4
A
108 116Right-handed alpha
Helix 5
AA5
A
119 125Right-handed alpha
Helix 6
AA6
A
131 138Right-handed alpha
Helix 7
AA7
A
139 150Right-handed alpha
Helix 8
AA8
A
153 171Right-handed alpha
Helix 9
AA9
A
1043 1069Right-handed alpha
Helix 10
AB1
A
1075 1104Right-handed alpha
Helix 11
AB2
C
34 62Right-handed alpha
Helix 12
AB3
C
66 94Right-handed alpha
Helix 13
AB4
C
100 105Right-handed alpha
Helix 14
AB5
C
108 116Right-handed alpha
Helix 15
AB6
C
119 125Right-handed alpha
Helix 16
AB7
C
131 138Right-handed alpha
Helix 17
AB8
C
139 150Right-handed alpha
Helix 18
AB9
C
153 171Right-handed alpha
Helix 19
AC1
C
1043 1069Right-handed alpha
Helix 20
AC2
C
1075 1105Right-handed alpha
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There are no sheets in PDB entry 5VYK
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il