Analysis of interatomic Contacts of Structural Units in PDB entry:
5VYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VYL entry

There is 1 chain in PDB entry 5VYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 22PRO 575
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5VYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 37Right-handed alpha
Helix 2
AA2
A
56 70Right-handed alpha
Helix 3
AA3
A
76 99Right-handed alpha
Helix 4
AA4
A
100 109Right-handed alpha
Helix 5
AA5
A
109 116Right-handed alpha
Helix 6
AA6
A
125 144Right-handed alpha
Helix 7
AA7
A
145 155Right-handed alpha
Helix 8
AA8
A
164 189Right-handed alpha
Helix 9
AA9
A
211 216Right-handed alpha
Helix 10
AB1
A
217 226Right-handed 310
Helix 11
AB2
A
228 256Right-handed alpha
Helix 12
AB3
A
261 277Right-handed alpha
Helix 13
AB4
A
287 300Right-handed alpha
Helix 14
AB5
A
342 347Right-handed alpha
Helix 15
AB6
A
369 379Right-handed alpha
Helix 16
AB7
A
384 404Right-handed alpha
Helix 17
AB8
A
407 418Right-handed alpha
Helix 18
AB9
A
421 439Right-handed alpha
Helix 19
AC1
A
451 472Right-handed alpha
Helix 20
AC2
A
478 490Right-handed alpha
Helix 21
AC3
A
495 503Right-handed alpha
Helix 22
AC4
A
507 518Right-handed alpha
Helix 23
AC5
A
522 545Right-handed alpha
Helix 24
AC6
A
551 568Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5VYL.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
348 349anti-parallel
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