Analysis of interatomic Contacts of Structural Units in PDB entry:
5VYQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VYQ entry

There are 2 chains in PDB entry 5VYQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -2PRO 232
B
 GLN -2LYS 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5VYQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 2Right-handed 310
Helix 2
AA2
A
10 24Right-handed alpha
Helix 3
AA3
A
44 56Right-handed alpha
Helix 4
AA4
A
69 76Right-handed alpha
Helix 5
AA5
A
93 102Right-handed alpha
Helix 6
AA6
A
134 160Right-handed alpha
Helix 7
AA7
A
175 184Right-handed alpha
Helix 8
AA8
A
193 203Right-handed alpha
Helix 9
AA9
B
10 25Right-handed alpha
Helix 10
AB1
B
44 47Right-handed 310
Helix 11
AB2
B
48 56Right-handed alpha
Helix 12
AB3
B
69 76Right-handed alpha
Helix 13
AB4
B
93 102Right-handed alpha
Helix 14
AB5
B
134 160Right-handed alpha
Helix 15
AB6
B
175 184Right-handed alpha
Helix 16
AB7
B
193 203Right-handed alpha
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There are 6 sheets in PDB entry 5VYQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
4 8parallel
Strand 3
A
58 62parallel
Strand 4
A
77 82parallel
Strand 5
A
105 111anti-parallel
Strand 6
A
121 127anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
173 174parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 192first strand
Strand 2
B
190 192anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
220 229anti-parallel
Strand 3
B
220 229anti-parallel
Strand 4
B
211 214anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
4 8parallel
Strand 3
B
58 62parallel
Strand 4
B
77 82parallel
Strand 5
B
105 111anti-parallel
Strand 6
B
121 127anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 91first strand
Strand 2
B
173 174parallel
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