Analysis of interatomic Contacts of Structural Units in PDB entry:
5VYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VYS entry

There are 2 chains in PDB entry 5VYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2MET 254
B
 MET 1SER 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5VYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 28Right-handed alpha
Helix 2
AA2
A
31 33Right-handed 310
Helix 3
AA3
A
46 57Right-handed alpha
Helix 4
AA4
A
67 78Right-handed alpha
Helix 5
AA5
A
92 97Right-handed alpha
Helix 6
AA6
A
118 126Right-handed alpha
Helix 7
AA7
A
160 174Right-handed alpha
Helix 8
AA8
A
175 185Right-handed alpha
Helix 9
AA9
A
203 208Right-handed 310
Helix 10
AB1
A
214 226Right-handed alpha
Helix 11
AB2
A
246 254Right-handed alpha
Helix 12
AB3
B
14 28Right-handed alpha
Helix 13
AB4
B
31 33Right-handed 310
Helix 14
AB5
B
46 56Right-handed alpha
Helix 15
AB6
B
67 78Right-handed alpha
Helix 16
AB7
B
92 97Right-handed alpha
Helix 17
AB8
B
118 126Right-handed alpha
Helix 18
AB9
B
160 175Right-handed alpha
Helix 19
AC1
B
175 185Right-handed alpha
Helix 20
AC2
B
203 208Right-handed 310
Helix 21
AC3
B
214 226Right-handed alpha
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There are 6 sheets in PDB entry 5VYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
35 38parallel
Strand 3
A
9 13parallel
Strand 4
A
81 85parallel
Strand 5
A
103 107parallel
Strand 6
A
130 136anti-parallel
Strand 7
A
147 154anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
198 199parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
243 244anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
35 38parallel
Strand 3
B
9 13parallel
Strand 4
B
81 85parallel
Strand 5
B
103 107parallel
Strand 6
B
130 136anti-parallel
Strand 7
B
147 154anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
198 199parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 236first strand
Strand 2
B
241 243anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il