Analysis of interatomic Contacts of Structural Units in PDB entry:
5VYW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VYW entry

There are 4 chains in PDB entry 5VYW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 1052
B	MET 1	SER 1052
C	MET 1	SER 1052
D	HIS 0	VAL 1053

There are204 helices in PDB entry 5VYW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	23	Right-handed alpha
Helix 2	AA2	A	32	36	Right-handed 310
Helix 3	AA3	A	38	44	Right-handed alpha
Helix 4	AA4	A	55	62	Right-handed alpha
Helix 5	AA5	A	62	74	Right-handed alpha
Helix 6	AA6	A	88	98	Right-handed alpha
Helix 7	AA7	A	106	115	Right-handed alpha
Helix 8	AA8	A	115	126	Right-handed alpha
Helix 9	AA9	A	247	266	Right-handed alpha
Helix 10	AB1	A	294	303	Right-handed alpha
Helix 11	AB2	A	305	314	Right-handed alpha
Helix 12	AB3	A	327	331	Right-handed 310
Helix 13	AB4	A	346	350	Right-handed 310
Helix 14	AB5	A	399	414	Right-handed alpha
Helix 15	AB6	A	422	432	Right-handed alpha
Helix 16	AB7	A	432	437	Right-handed alpha
Helix 17	AB8	A	448	453	Right-handed 310
Helix 18	AB9	A	460	475	Right-handed alpha
Helix 19	AC1	A	502	511	Right-handed alpha
Helix 20	AC2	A	511	521	Right-handed alpha
Helix 21	AC3	A	533	540	Right-handed alpha
Helix 22	AC4	A	545	550	Right-handed alpha
Helix 23	AC5	A	552	560	Right-handed alpha
Helix 24	AC6	A	572	580	Right-handed alpha
Helix 25	AC7	A	584	596	Right-handed alpha
Helix 26	AC8	A	617	632	Right-handed alpha
Helix 27	AC9	A	644	658	Right-handed alpha
Helix 28	AD1	A	677	680	Right-handed 310
Helix 29	AD2	A	681	695	Right-handed alpha
Helix 30	AD3	A	710	725	Right-handed alpha
Helix 31	AD4	A	734	738	Right-handed 310
Helix 32	AD5	A	739	750	Right-handed alpha
Helix 33	AD6	A	759	763	Right-handed 310
Helix 34	AD7	A	770	778	Right-handed alpha
Helix 35	AD8	A	788	806	Right-handed alpha
Helix 36	AD9	A	807	810	Right-handed 310
Helix 37	AE1	A	818	824	Right-handed alpha
Helix 38	AE2	A	826	839	Right-handed alpha
Helix 39	AE3	A	840	841	Right-handed 310
Helix 40	AE4	A	842	844	Right-handed 310
Helix 41	AE5	A	845	860	Right-handed alpha
Helix 42	AE6	A	868	883	Right-handed alpha
Helix 43	AE7	A	886	894	Right-handed alpha
Helix 44	AE8	A	900	909	Right-handed alpha
Helix 45	AE9	A	919	928	Right-handed alpha
Helix 46	AF1	A	936	941	Right-handed 310
Helix 47	AF2	A	945	958	Right-handed alpha
Helix 48	AF3	A	962	972	Right-handed alpha
Helix 49	AF4	A	972	987	Right-handed alpha
Helix 50	AF5	A	988	992	Right-handed 310
Helix 51	AF6	A	993	1000	Right-handed alpha
Helix 52	AF7	B	9	23	Right-handed alpha
Helix 53	AF8	B	32	36	Right-handed 310
Helix 54	AF9	B	38	44	Right-handed alpha
Helix 55	AG1	B	55	62	Right-handed alpha
Helix 56	AG2	B	62	74	Right-handed alpha
Helix 57	AG3	B	88	98	Right-handed alpha
Helix 58	AG4	B	106	115	Right-handed alpha
Helix 59	AG5	B	115	126	Right-handed alpha
Helix 60	AG6	B	247	266	Right-handed alpha
Helix 61	AG7	B	294	303	Right-handed alpha
Helix 62	AG8	B	305	314	Right-handed alpha
Helix 63	AG9	B	327	331	Right-handed 310
Helix 64	AH1	B	346	350	Right-handed 310
Helix 65	AH2	B	399	414	Right-handed alpha
Helix 66	AH3	B	422	432	Right-handed alpha
Helix 67	AH4	B	432	437	Right-handed alpha
Helix 68	AH5	B	448	453	Right-handed 310
Helix 69	AH6	B	459	475	Right-handed alpha
Helix 70	AH7	B	502	511	Right-handed alpha
Helix 71	AH8	B	511	521	Right-handed alpha
Helix 72	AH9	B	533	540	Right-handed alpha
Helix 73	AI1	B	545	550	Right-handed alpha
Helix 74	AI2	B	552	560	Right-handed alpha
Helix 75	AI3	B	572	582	Right-handed alpha
Helix 76	AI4	B	584	596	Right-handed alpha
Helix 77	AI5	B	617	632	Right-handed alpha
Helix 78	AI6	B	644	658	Right-handed alpha
Helix 79	AI7	B	677	680	Right-handed 310
Helix 80	AI8	B	681	695	Right-handed alpha
Helix 81	AI9	B	710	723	Right-handed alpha
Helix 82	AJ1	B	734	738	Right-handed 310
Helix 83	AJ2	B	739	750	Right-handed alpha
Helix 84	AJ3	B	759	763	Right-handed 310
Helix 85	AJ4	B	770	778	Right-handed alpha
Helix 86	AJ5	B	788	806	Right-handed alpha
Helix 87	AJ6	B	807	810	Right-handed 310
Helix 88	AJ7	B	818	824	Right-handed alpha
Helix 89	AJ8	B	826	839	Right-handed alpha
Helix 90	AJ9	B	842	844	Right-handed 310
Helix 91	AK1	B	845	860	Right-handed alpha
Helix 92	AK2	B	868	883	Right-handed alpha
Helix 93	AK3	B	886	894	Right-handed alpha
Helix 94	AK4	B	900	908	Right-handed alpha
Helix 95	AK5	B	919	928	Right-handed alpha
Helix 96	AK6	B	936	941	Right-handed 310
Helix 97	AK7	B	945	958	Right-handed alpha
Helix 98	AK8	B	962	972	Right-handed alpha
Helix 99	AK9	B	972	987	Right-handed alpha
Helix 100	AL1	B	988	992	Right-handed 310
Helix 101	AL2	B	993	1000	Right-handed alpha
Helix 102	AL3	C	9	23	Right-handed alpha
Helix 103	AL4	C	32	36	Right-handed 310
Helix 104	AL5	C	38	44	Right-handed alpha
Helix 105	AL6	C	55	62	Right-handed alpha
Helix 106	AL7	C	62	74	Right-handed alpha
Helix 107	AL8	C	88	98	Right-handed alpha
Helix 108	AL9	C	106	115	Right-handed alpha
Helix 109	AM1	C	115	126	Right-handed alpha
Helix 110	AM2	C	247	266	Right-handed alpha
Helix 111	AM3	C	294	303	Right-handed alpha
Helix 112	AM4	C	305	314	Right-handed alpha
Helix 113	AM5	C	327	331	Right-handed 310
Helix 114	AM6	C	346	350	Right-handed 310
Helix 115	AM7	C	399	414	Right-handed alpha
Helix 116	AM8	C	422	432	Right-handed alpha
Helix 117	AM9	C	432	437	Right-handed alpha
Helix 118	AN1	C	448	453	Right-handed 310
Helix 119	AN2	C	459	475	Right-handed alpha
Helix 120	AN3	C	502	511	Right-handed alpha
Helix 121	AN4	C	511	521	Right-handed alpha
Helix 122	AN5	C	533	540	Right-handed alpha
Helix 123	AN6	C	545	550	Right-handed alpha
Helix 124	AN7	C	552	560	Right-handed alpha
Helix 125	AN8	C	572	580	Right-handed alpha
Helix 126	AN9	C	584	596	Right-handed alpha
Helix 127	AO1	C	617	632	Right-handed alpha
Helix 128	AO2	C	644	658	Right-handed alpha
Helix 129	AO3	C	677	680	Right-handed 310
Helix 130	AO4	C	681	695	Right-handed alpha
Helix 131	AO5	C	710	723	Right-handed alpha
Helix 132	AO6	C	734	738	Right-handed 310
Helix 133	AO7	C	739	750	Right-handed alpha
Helix 134	AO8	C	759	763	Right-handed 310
Helix 135	AO9	C	770	778	Right-handed alpha
Helix 136	AP1	C	788	806	Right-handed alpha
Helix 137	AP2	C	807	810	Right-handed 310
Helix 138	AP3	C	818	824	Right-handed alpha
Helix 139	AP4	C	826	839	Right-handed alpha
Helix 140	AP5	C	840	841	Right-handed 310
Helix 141	AP6	C	842	844	Right-handed 310
Helix 142	AP7	C	845	860	Right-handed alpha
Helix 143	AP8	C	868	883	Right-handed alpha
Helix 144	AP9	C	886	894	Right-handed alpha
Helix 145	AQ1	C	900	908	Right-handed alpha
Helix 146	AQ2	C	919	928	Right-handed alpha
Helix 147	AQ3	C	936	941	Right-handed 310
Helix 148	AQ4	C	945	958	Right-handed alpha
Helix 149	AQ5	C	962	972	Right-handed alpha
Helix 150	AQ6	C	972	987	Right-handed alpha
Helix 151	AQ7	C	988	992	Right-handed 310
Helix 152	AQ8	C	993	1000	Right-handed alpha
Helix 153	AQ9	D	9	23	Right-handed alpha
Helix 154	AR1	D	32	36	Right-handed 310
Helix 155	AR2	D	38	44	Right-handed alpha
Helix 156	AR3	D	55	62	Right-handed alpha
Helix 157	AR4	D	62	74	Right-handed alpha
Helix 158	AR5	D	88	98	Right-handed alpha
Helix 159	AR6	D	106	115	Right-handed alpha
Helix 160	AR7	D	115	126	Right-handed alpha
Helix 161	AR8	D	139	149	Right-handed alpha
Helix 162	AR9	D	172	189	Right-handed alpha
Helix 163	AS1	D	247	266	Right-handed alpha
Helix 164	AS2	D	294	303	Right-handed alpha
Helix 165	AS3	D	305	314	Right-handed alpha
Helix 166	AS4	D	327	331	Right-handed 310
Helix 167	AS5	D	346	350	Right-handed 310
Helix 168	AS6	D	399	414	Right-handed alpha
Helix 169	AS7	D	422	432	Right-handed alpha
Helix 170	AS8	D	432	437	Right-handed alpha
Helix 171	AS9	D	448	453	Right-handed 310
Helix 172	AT1	D	459	475	Right-handed alpha
Helix 173	AT2	D	502	511	Right-handed alpha
Helix 174	AT3	D	511	521	Right-handed alpha
Helix 175	AT4	D	533	540	Right-handed alpha
Helix 176	AT5	D	545	551	Right-handed alpha
Helix 177	AT6	D	552	560	Right-handed alpha
Helix 178	AT7	D	572	580	Right-handed alpha
Helix 179	AT8	D	584	596	Right-handed alpha
Helix 180	AT9	D	617	632	Right-handed alpha
Helix 181	AU1	D	644	658	Right-handed alpha
Helix 182	AU2	D	677	680	Right-handed 310
Helix 183	AU3	D	681	695	Right-handed alpha
Helix 184	AU4	D	710	725	Right-handed alpha
Helix 185	AU5	D	734	738	Right-handed 310
Helix 186	AU6	D	739	750	Right-handed alpha
Helix 187	AU7	D	759	763	Right-handed 310
Helix 188	AU8	D	770	778	Right-handed alpha
Helix 189	AU9	D	788	806	Right-handed alpha
Helix 190	AV1	D	807	810	Right-handed 310
Helix 191	AV2	D	818	824	Right-handed alpha
Helix 192	AV3	D	826	839	Right-handed alpha
Helix 193	AV4	D	842	844	Right-handed 310
Helix 194	AV5	D	845	860	Right-handed alpha
Helix 195	AV6	D	868	883	Right-handed alpha
Helix 196	AV7	D	886	894	Right-handed alpha
Helix 197	AV8	D	900	908	Right-handed alpha
Helix 198	AV9	D	919	928	Right-handed alpha
Helix 199	AW1	D	936	941	Right-handed 310
Helix 200	AW2	D	945	958	Right-handed alpha
Helix 201	AW3	D	962	972	Right-handed alpha
Helix 202	AW4	D	972	987	Right-handed alpha
Helix 203	AW5	D	988	992	Right-handed 310
Helix 204	AW6	D	993	1000	Right-handed alpha

There are 21 sheets in PDB entry 5VYW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	26	31	parallel
Strand 3	A	3	6	parallel
Strand 4	A	77	79	parallel
Strand 5	A	101	102	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	288	first strand
Strand 2	A	269	278	anti-parallel
Strand 3	A	206	214	anti-parallel
Strand 4	A	220	231	anti-parallel
Strand 5	A	236	241	anti-parallel
Strand 6	A	336	342	anti-parallel
Strand 7	A	391	397	anti-parallel
Strand 8	A	369	373	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	357	first strand
Strand 2	A	381	382	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	785	786	first strand
Strand 2	A	525	529	parallel
Strand 3	A	754	757	parallel
Strand 4	A	729	732	parallel
Strand 5	A	699	703	parallel
Strand 6	A	661	667	parallel
Strand 7	A	635	639	parallel
Strand 8	A	600	606	parallel
Strand 9	A	565	569	parallel
Strand 10	A	525	529	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1006	1012	first strand
Strand 2	A	1015	1024	anti-parallel
Strand 3	A	1032	1039	anti-parallel
Strand 4	A	1043	1049	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	49	first strand
Strand 2	B	26	31	parallel
Strand 3	B	3	6	parallel
Strand 4	B	77	79	parallel
Strand 5	B	101	102	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	288	first strand
Strand 2	B	269	278	anti-parallel
Strand 3	B	206	214	anti-parallel
Strand 4	B	220	231	anti-parallel
Strand 5	B	236	241	anti-parallel
Strand 6	B	336	343	anti-parallel
Strand 7	B	389	397	anti-parallel
Strand 8	B	369	373	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	357	first strand
Strand 2	B	381	382	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	785	786	first strand
Strand 2	B	525	529	parallel
Strand 3	B	754	757	parallel
Strand 4	B	729	732	parallel
Strand 5	B	699	703	parallel
Strand 6	B	661	667	parallel
Strand 7	B	635	639	parallel
Strand 8	B	600	606	parallel
Strand 9	B	563	569	parallel
Strand 10	B	525	529	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1006	1012	first strand
Strand 2	B	1015	1024	anti-parallel
Strand 3	B	1032	1039	anti-parallel
Strand 4	B	1043	1049	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	49	first strand
Strand 2	C	26	31	parallel
Strand 3	C	3	6	parallel
Strand 4	C	77	79	parallel
Strand 5	C	101	102	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	288	first strand
Strand 2	C	269	278	anti-parallel
Strand 3	C	206	214	anti-parallel
Strand 4	C	220	231	anti-parallel
Strand 5	C	236	241	anti-parallel
Strand 6	C	336	342	anti-parallel
Strand 7	C	391	397	anti-parallel
Strand 8	C	369	373	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	357	first strand
Strand 2	C	381	382	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	785	786	first strand
Strand 2	C	525	529	parallel
Strand 3	C	754	757	parallel
Strand 4	C	729	732	parallel
Strand 5	C	699	703	parallel
Strand 6	C	661	667	parallel
Strand 7	C	635	639	parallel
Strand 8	C	600	606	parallel
Strand 9	C	565	569	parallel
Strand 10	C	525	529	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1006	1012	first strand
Strand 2	C	1015	1024	anti-parallel
Strand 3	C	1032	1039	anti-parallel
Strand 4	C	1043	1049	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	49	first strand
Strand 2	D	26	31	parallel
Strand 3	D	3	6	parallel
Strand 4	D	77	79	parallel
Strand 5	D	101	102	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	170	first strand
Strand 2	D	154	157	anti-parallel
Strand 3	D	197	200	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	288	first strand
Strand 2	D	269	278	anti-parallel
Strand 3	D	206	214	anti-parallel
Strand 4	D	220	231	anti-parallel
Strand 5	D	236	241	anti-parallel
Strand 6	D	336	343	anti-parallel
Strand 7	D	389	397	anti-parallel
Strand 8	D	369	373	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	357	first strand
Strand 2	D	381	382	anti-parallel

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There are 10 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	785	786	first strand
Strand 2	D	525	529	parallel
Strand 3	D	754	757	parallel
Strand 4	D	729	732	parallel
Strand 5	D	699	703	parallel
Strand 6	D	661	667	parallel
Strand 7	D	635	639	parallel
Strand 8	D	600	606	parallel
Strand 9	D	565	569	parallel
Strand 10	D	525	529	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1006	1012	first strand
Strand 2	D	1015	1024	anti-parallel
Strand 3	D	1032	1039	anti-parallel
Strand 4	D	1043	1049	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VYW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VYW