Analysis of interatomic Contacts of Structural Units in PDB entry:
5VZ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VZ4 entry

There are 2 chains in PDB entry 5VZ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5ILE 112
B
 TRP 129ASN 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5VZ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 28Right-handed alpha
Helix 2
AA2
A
56 69Right-handed alpha
Helix 3
AA3
B
130 140Right-handed alpha
Helix 4
AA4
B
141 155Right-handed alpha
Helix 5
AA5
B
163 176Right-handed alpha
Helix 6
AA6
B
179 189Right-handed alpha
Helix 7
AA7
B
195 206Right-handed alpha
Helix 8
AA8
B
207 212Right-handed alpha
Helix 9
AA9
B
219 229Right-handed alpha
Helix 10
AB1
B
230 245Right-handed alpha
Helix 11
AB2
B
245 253Right-handed alpha
Helix 12
AB3
B
255 261Right-handed alpha
Helix 13
AB4
B
272 281Right-handed alpha
Helix 14
AB5
B
285 289Right-handed 310
Helix 15
AB6
B
300 312Right-handed alpha
Helix 16
AB7
B
313 316Right-handed 310
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There are 2 sheets in PDB entry 5VZ4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 23first strand
Strand 2
A
38 45anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
77 91anti-parallel
Strand 3
A
96 112anti-parallel
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