Analysis of interatomic Contacts of Structural Units in PDB entry:
5VZJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VZJ entry

There are 5 chains in PDB entry 5VZJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	GLU 304
B	MET 1	SER 241
C	THR 9	ASN 393
D	SER 2	VAL 223
E	MET 1	ASP 233

There are115 helices in PDB entry 5VZJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	21	Right-handed alpha
Helix 2	AA2	A	84	88	Right-handed 310
Helix 3	AA3	A	98	113	Right-handed alpha
Helix 4	AA4	A	120	122	Right-handed 310
Helix 5	AA5	A	146	162	Right-handed alpha
Helix 6	AA6	A	206	211	Right-handed alpha
Helix 7	AA7	A	224	230	Right-handed alpha
Helix 8	AA8	A	258	291	Right-handed alpha
Helix 9	AA9	B	80	83	Right-handed 310
Helix 10	AB1	B	94	110	Right-handed alpha
Helix 11	AB2	B	134	150	Right-handed alpha
Helix 12	AB3	B	175	180	Right-handed alpha
Helix 13	AB4	B	207	241	Right-handed alpha
Helix 14	AB5	C	18	26	Right-handed alpha
Helix 15	AB6	C	26	36	Right-handed alpha
Helix 16	AB7	C	123	125	Right-handed 310
Helix 17	AB8	C	145	163	Right-handed alpha
Helix 18	AB9	C	168	170	Right-handed 310
Helix 19	AC1	C	226	239	Right-handed alpha
Helix 20	AC2	C	303	307	Right-handed 310
Helix 21	AC3	C	335	343	Right-handed alpha
Helix 22	AC4	C	370	390	Right-handed alpha
Helix 23	AC5	D	60	75	Right-handed alpha
Helix 24	AC6	D	79	83	Right-handed 310
Helix 25	AC7	D	106	123	Right-handed alpha
Helix 26	AC8	D	150	156	Right-handed alpha
Helix 27	AC9	D	187	221	Right-handed alpha
Helix 28	AD1	E	4	16	Right-handed alpha
Helix 29	AD2	E	89	103	Right-handed alpha
Helix 30	AD3	E	110	115	Right-handed 310
Helix 31	AD4	E	137	150	Right-handed alpha
Helix 32	AD5	E	240	263	Right-handed alpha
Helix 33	AD6	F	106	122	Right-handed alpha
Helix 34	AD7	F	126	130	Right-handed 310
Helix 35	AD8	F	163	167	Right-handed 310
Helix 36	AD9	F	168	183	Right-handed alpha
Helix 37	AE1	F	223	246	Right-handed alpha
Helix 38	AE2	G	159	168	Right-handed alpha
Helix 39	AE3	G	174	180	Right-handed alpha
Helix 40	AE4	G	200	217	Right-handed alpha
Helix 41	AE5	G	219	221	Right-handed 310
Helix 42	AE6	G	222	234	Right-handed alpha
Helix 43	AE7	H	139	141	Right-handed 310
Helix 44	AE8	H	158	162	Right-handed 310
Helix 45	AE9	H	203	207	Right-handed 310
Helix 46	AF1	H	237	243	Right-handed alpha
Helix 47	AF2	H	277	281	Right-handed 310
Helix 48	AF3	H	290	310	Right-handed alpha
Helix 49	AF4	H	315	330	Right-handed alpha
Helix 50	AF5	H	337	352	Right-handed alpha
Helix 51	AF6	I	114	120	Right-handed alpha
Helix 52	AF7	I	123	131	Right-handed alpha
Helix 53	AF8	I	208	210	Right-handed 310
Helix 54	AF9	I	219	223	Right-handed 310
Helix 55	AG1	J	131	136	Right-handed 310
Helix 56	AG2	J	163	167	Right-handed 310
Helix 57	AG3	J	183	189	Right-handed alpha
Helix 58	AG4	J	218	230	Right-handed alpha
Helix 59	AG5	J	269	276	Right-handed 310
Helix 60	AG6	J	277	282	Right-handed alpha
Helix 61	AG7	J	295	303	Right-handed alpha
Helix 62	AG8	J	314	322	Right-handed alpha
Helix 63	AG9	J	327	335	Right-handed alpha
Helix 64	AH1	J	355	368	Right-handed alpha
Helix 65	AH2	J	368	383	Right-handed alpha
Helix 66	AH3	J	385	398	Right-handed alpha
Helix 67	AH4	J	425	433	Right-handed alpha
Helix 68	AH5	J	435	437	Right-handed 310
Helix 69	AH6	J	438	456	Right-handed alpha
Helix 70	AH7	J	459	464	Right-handed alpha
Helix 71	AH8	J	465	476	Right-handed alpha
Helix 72	AH9	J	479	485	Right-handed alpha
Helix 73	AI1	J	491	497	Right-handed alpha
Helix 74	AI2	J	497	518	Right-handed alpha
Helix 75	AI3	J	542	553	Right-handed alpha
Helix 76	AI4	J	554	556	Right-handed 310
Helix 77	AI5	J	595	609	Right-handed alpha
Helix 78	AI6	K	54	58	Right-handed 310
Helix 79	AI7	K	91	98	Right-handed alpha
Helix 80	AI8	K	98	103	Right-handed alpha
Helix 81	AI9	K	115	125	Right-handed alpha
Helix 82	AJ1	K	125	138	Right-handed alpha
Helix 83	AJ2	K	165	185	Right-handed alpha
Helix 84	AJ3	K	186	189	Right-handed 310
Helix 85	AJ4	K	198	207	Right-handed alpha
Helix 86	AJ5	K	217	224	Right-handed alpha
Helix 87	AJ6	K	227	232	Right-handed alpha
Helix 88	AJ7	K	233	235	Right-handed 310
Helix 89	AJ8	K	260	270	Right-handed alpha
Helix 90	AJ9	K	303	308	Right-handed alpha
Helix 91	AK1	K	322	326	Right-handed 310
Helix 92	AK2	K	335	339	Right-handed 310
Helix 93	AK3	K	366	383	Right-handed alpha
Helix 94	AK4	K	409	412	Right-handed 310
Helix 95	AK5	K	440	445	Right-handed alpha
Helix 96	AK6	K	476	487	Right-handed alpha
Helix 97	AK7	K	497	503	Right-handed alpha
Helix 98	AK8	K	506	510	Right-handed 310
Helix 99	AK9	K	520	525	Right-handed alpha
Helix 100	AL1	K	526	529	Right-handed 310
Helix 101	AL2	K	573	576	Right-handed 310
Helix 102	AL3	K	581	591	Right-handed alpha
Helix 103	AL4	K	605	610	Right-handed alpha
Helix 104	AL5	K	654	663	Right-handed alpha
Helix 105	AL6	K	668	692	Right-handed alpha
Helix 106	AL7	K	721	746	Right-handed alpha
Helix 107	AL8	K	763	773	Right-handed alpha
Helix 108	AL9	K	782	791	Right-handed alpha
Helix 109	AM1	K	799	812	Right-handed alpha
Helix 110	AM2	K	822	824	Right-handed 310
Helix 111	AM3	K	825	830	Right-handed 310
Helix 112	AM4	K	849	863	Right-handed alpha
Helix 113	AM5	K	868	872	Right-handed 310
Helix 114	AM6	K	873	910	Right-handed alpha
Helix 115	AM7	K	947	951	Right-handed 310

There are 45 sheets in PDB entry 5VZJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	54	61	anti-parallel
Strand 4	A	130	142	anti-parallel
Strand 5	A	76	80	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	130	142	anti-parallel
Strand 3	A	124	126	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	185	186	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	170	first strand
Strand 2	A	173	176	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	233	239	anti-parallel
Strand 4	A	244	257	anti-parallel
Strand 5	B	195	201	anti-parallel
Strand 6	B	183	190	anti-parallel
Strand 7	B	158	166	anti-parallel
Strand 8	B	169	172	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	233	239	anti-parallel
Strand 4	A	244	257	anti-parallel
Strand 5	B	205	206	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	302	first strand
Strand 2	K	599	601	anti-parallel
Strand 3	K	594	595	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	38	44	anti-parallel
Strand 3	B	48	57	anti-parallel
Strand 4	B	120	130	anti-parallel
Strand 5	B	70	78	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	J	582	585	anti-parallel
Strand 3	J	591	593	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	79	82	anti-parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	209	220	anti-parallel
Strand 5	C	131	136	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	79	82	anti-parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	209	220	anti-parallel
Strand 5	C	93	97	anti-parallel
Strand 6	F	15	17	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	165	166	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	242	248	parallel
Strand 3	C	275	283	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	332	first strand
Strand 2	C	293	301	anti-parallel
Strand 3	C	345	352	anti-parallel
Strand 4	C	356	364	anti-parallel
Strand 5	D	173	186	anti-parallel
Strand 6	D	157	168	anti-parallel
Strand 7	D	130	139	anti-parallel
Strand 8	D	145	147	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	15	21	anti-parallel
Strand 3	D	24	34	anti-parallel
Strand 4	D	86	96	anti-parallel
Strand 5	D	46	53	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	82	first strand
Strand 2	E	120	132	parallel
Strand 3	E	57	68	anti-parallel
Strand 4	E	46	51	anti-parallel
Strand 5	E	34	38	anti-parallel
Strand 6	H	7	11	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	158	first strand
Strand 2	E	171	179	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	199	first strand
Strand 2	E	186	193	anti-parallel
Strand 3	E	211	218	anti-parallel
Strand 4	E	221	222	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	227	first strand
Strand 2	F	209	215	anti-parallel
Strand 3	F	199	204	anti-parallel
Strand 4	F	192	196	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	50	first strand
Strand 2	F	58	66	anti-parallel
Strand 3	F	69	82	anti-parallel
Strand 4	F	133	146	anti-parallel
Strand 5	F	92	102	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1	5	first strand
Strand 2	G	40	46	anti-parallel
Strand 3	G	53	59	anti-parallel
Strand 4	G	19	21	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	27	first strand
Strand 2	G	34	36	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	149	first strand
Strand 2	G	118	125	anti-parallel
Strand 3	G	132	135	anti-parallel
Strand 4	G	95	98	parallel
Strand 5	G	83	87	anti-parallel
Strand 6	G	71	79	anti-parallel
Strand 7	G	118	125	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	157	first strand
Strand 2	G	193	198	anti-parallel
Strand 3	G	184	189	anti-parallel
Strand 4	L	112	115	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	55	first strand
Strand 2	H	86	91	anti-parallel
Strand 3	H	94	99	anti-parallel
Strand 4	H	68	69	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	62	first strand
Strand 2	H	79	82	anti-parallel
Strand 3	H	73	76	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	119	first strand
Strand 2	H	123	127	anti-parallel
Strand 3	H	134	137	anti-parallel
Strand 4	H	182	185	parallel
Strand 5	H	168	176	anti-parallel
Strand 6	H	111	119	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	197	201	first strand
Strand 2	H	230	235	anti-parallel
Strand 3	H	221	224	anti-parallel
Strand 4	H	214	217	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	11	first strand
Strand 2	I	62	65	anti-parallel
Strand 3	I	109	112	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	19	first strand
Strand 2	I	53	58	anti-parallel
Strand 3	I	41	46	anti-parallel

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There are 10 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	283	284	first strand
Strand 2	I	275	276	anti-parallel
Strand 3	I	266	269	anti-parallel
Strand 4	I	253	258	anti-parallel
Strand 5	I	229	234	anti-parallel
Strand 6	I	244	246	anti-parallel
Strand 7	I	204	206	parallel
Strand 8	I	150	158	anti-parallel
Strand 9	I	138	146	anti-parallel
Strand 10	I	229	234	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	214	216	first strand
Strand 2	J	263	265	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	250	257	first strand
Strand 2	J	234	242	anti-parallel
Strand 3	J	287	290	parallel
Strand 4	J	311	313	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	400	401	first strand
Strand 2	J	415	416	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	18	28	anti-parallel
Strand 3	K	31	41	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	144	148	first strand
Strand 2	K	110	114	parallel
Strand 3	K	86	89	parallel
Strand 4	K	191	195	parallel
Strand 5	K	214	216	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	273	277	first strand
Strand 2	K	315	320	anti-parallel
Strand 3	K	390	397	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	280	281	first strand
Strand 2	K	284	290	anti-parallel
Strand 3	K	299	302	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	402	407	first strand
Strand 2	K	420	426	anti-parallel
Strand 3	K	434	438	anti-parallel
Strand 4	K	464	473	parallel
Strand 5	K	447	455	anti-parallel
Strand 6	K	402	407	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	532	533	first strand
Strand 2	K	640	647	parallel
Strand 3	K	620	627	anti-parallel
Strand 4	K	567	571	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	542	543	first strand
Strand 2	K	652	653	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	701	703	first strand
Strand 2	K	715	717	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	751	754	first strand
Strand 2	K	817	820	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	935	940	first strand
Strand 2	K	925	930	anti-parallel
Strand 3	K	913	921	anti-parallel
Strand 4	K	978	984	anti-parallel
Strand 5	K	997	1000	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	952	954	first strand
Strand 2	K	959	962	anti-parallel
Strand 3	K	971	973	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VZJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VZJ