Analysis of interatomic Contacts of Structural Units in PDB entry:
5VZU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VZU entry

There are 6 chains in PDB entry 5VZU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1002	LYS 1163
B	SER 63	SER 539
C	ALA 1002	LYS 1163
D	GLY 64	SER 539
E	PRO 287	ILE 295
F	VAL 290	ILE 295

There are 53 helices in PDB entry 5VZU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1018	1022	Right-handed alpha
Helix 2	AA2	A	1024	1033	Right-handed alpha
Helix 3	AA3	A	1051	1065	Right-handed alpha
Helix 4	AA4	A	1086	1093	Right-handed alpha
Helix 5	AA5	A	1096	1111	Right-handed alpha
Helix 6	AA6	A	1112	1128	Right-handed alpha
Helix 7	AA7	A	1131	1140	Right-handed alpha
Helix 8	AA8	A	1146	1157	Right-handed alpha
Helix 9	AA9	A	1158	1162	Right-handed 310
Helix 10	AB1	B	66	70	Right-handed 310
Helix 11	AB2	B	71	81	Right-handed alpha
Helix 12	AB3	B	86	92	Right-handed alpha
Helix 13	AB4	B	94	101	Right-handed alpha
Helix 14	AB5	B	103	116	Right-handed alpha
Helix 15	AB6	B	120	128	Right-handed alpha
Helix 16	AB7	B	130	138	Right-handed alpha
Helix 17	AB8	B	142	146	Right-handed 310
Helix 18	AB9	B	232	237	Right-handed 310
Helix 19	AC1	B	240	255	Right-handed alpha
Helix 20	AC2	B	257	262	Right-handed alpha
Helix 21	AC3	B	264	279	Right-handed alpha
Helix 22	AC4	B	310	312	Right-handed 310
Helix 23	AC5	B	356	362	Right-handed alpha
Helix 24	AC6	B	362	383	Right-handed alpha
Helix 25	AC7	B	523	538	Right-handed alpha
Helix 26	AC8	C	1018	1022	Right-handed alpha
Helix 27	AC9	C	1024	1033	Right-handed alpha
Helix 28	AD1	C	1051	1065	Right-handed alpha
Helix 29	AD2	C	1086	1094	Right-handed alpha
Helix 30	AD3	C	1096	1111	Right-handed alpha
Helix 31	AD4	C	1112	1128	Right-handed alpha
Helix 32	AD5	C	1131	1139	Right-handed alpha
Helix 33	AD6	C	1146	1157	Right-handed alpha
Helix 34	AD7	C	1158	1162	Right-handed 310
Helix 35	AD8	D	66	70	Right-handed 310
Helix 36	AD9	D	71	81	Right-handed alpha
Helix 37	AE1	D	82	85	Right-handed 310
Helix 38	AE2	D	86	92	Right-handed alpha
Helix 39	AE3	D	94	101	Right-handed alpha
Helix 40	AE4	D	103	116	Right-handed alpha
Helix 41	AE5	D	120	128	Right-handed alpha
Helix 42	AE6	D	130	138	Right-handed alpha
Helix 43	AE7	D	138	143	Right-handed alpha
Helix 44	AE8	D	144	146	Right-handed 310
Helix 45	AE9	D	232	237	Right-handed 310
Helix 46	AF1	D	240	255	Right-handed alpha
Helix 47	AF2	D	263	279	Right-handed alpha
Helix 48	AF3	D	310	312	Right-handed 310
Helix 49	AF4	D	356	361	Right-handed alpha
Helix 50	AF5	D	362	383	Right-handed alpha
Helix 51	AF6	D	523	538	Right-handed alpha
Helix 52	AF7	E	287	295	Right-handed 310
Helix 53	AF8	F	291	295	Right-handed 310

There are 8 sheets in PDB entry 5VZU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1013	1017	first strand
Strand 2	A	1003	1007	anti-parallel
Strand 3	A	1045	1046	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	151	first strand
Strand 2	B	160	165	anti-parallel
Strand 3	B	168	175	anti-parallel
Strand 4	B	187	195	anti-parallel
Strand 5	B	203	206	anti-parallel
Strand 6	B	214	222	anti-parallel
Strand 7	B	225	230	anti-parallel
Strand 8	B	284	289	anti-parallel
Strand 9	B	147	151	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	B	505	511	parallel
Strand 3	B	495	500	anti-parallel
Strand 4	B	479	492	anti-parallel
Strand 5	B	465	475	anti-parallel
Strand 6	B	342	352	anti-parallel
Strand 7	B	325	330	anti-parallel
Strand 8	B	314	321	anti-parallel
Strand 9	B	303	308	anti-parallel
Strand 10	B	505	511	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	445	first strand
Strand 2	B	462	463	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1014	1017	first strand
Strand 2	C	1003	1007	anti-parallel
Strand 3	C	1045	1046	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	215	first strand
Strand 2	D	200	206	anti-parallel
Strand 3	D	187	197	anti-parallel
Strand 4	D	168	175	anti-parallel
Strand 5	D	159	165	anti-parallel
Strand 6	D	147	151	anti-parallel
Strand 7	D	284	289	anti-parallel
Strand 8	D	225	229	anti-parallel
Strand 9	D	217	222	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	308	first strand
Strand 2	D	314	321	anti-parallel
Strand 3	D	325	330	anti-parallel
Strand 4	D	344	351	anti-parallel
Strand 5	D	465	475	anti-parallel
Strand 6	D	479	492	anti-parallel
Strand 7	D	495	500	anti-parallel
Strand 8	D	505	511	anti-parallel
Strand 9	D	303	308	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	445	first strand
Strand 2	D	462	463	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VZU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VZU