Analysis of interatomic Contacts of Structural Units in PDB entry:
5VZW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VZW entry

There are 6 chains in PDB entry 5VZW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	MET 147
C	SER -1	GLY 76
F	VAL 28	ASN 104
G	VAL 28	ASN 104
B	ALA 2	MET 147
D	HIS 0	GLY 76

There are 22 helices in PDB entry 5VZW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	16	Right-handed alpha
Helix 2	AA2	A	86	90	Right-handed 310
Helix 3	AA3	A	98	112	Right-handed alpha
Helix 4	AA4	A	120	130	Right-handed alpha
Helix 5	AA5	A	130	147	Right-handed alpha
Helix 6	AA6	C	22	35	Right-handed alpha
Helix 7	AA7	C	37	39	Right-handed 310
Helix 8	AA8	F	41	44	Right-handed 310
Helix 9	AA9	F	57	63	Right-handed alpha
Helix 10	AB1	F	84	89	Right-handed 310
Helix 11	AB2	F	92	103	Right-handed alpha
Helix 12	AB3	G	41	44	Right-handed 310
Helix 13	AB4	G	57	62	Right-handed alpha
Helix 14	AB5	G	84	89	Right-handed 310
Helix 15	AB6	G	92	104	Right-handed alpha
Helix 16	AB7	B	3	16	Right-handed alpha
Helix 17	AB8	B	86	90	Right-handed 310
Helix 18	AB9	B	98	112	Right-handed alpha
Helix 19	AC1	B	120	130	Right-handed alpha
Helix 20	AC2	B	130	147	Right-handed alpha
Helix 21	AC3	D	22	35	Right-handed alpha
Helix 22	AC4	D	37	39	Right-handed 310

There are 8 sheets in PDB entry 5VZW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	25	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	49	55	anti-parallel
Strand 4	A	66	69	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	17	first strand
Strand 2	C	1	6	anti-parallel
Strand 3	C	66	71	parallel
Strand 4	C	41	45	anti-parallel
Strand 5	C	48	49	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	48	first strand
Strand 2	F	54	56	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	71	first strand
Strand 2	F	78	80	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	48	first strand
Strand 2	G	54	56	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	71	first strand
Strand 2	G	78	80	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	25	first strand
Strand 2	B	32	38	anti-parallel
Strand 3	B	49	55	anti-parallel
Strand 4	B	66	69	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	17	first strand
Strand 2	D	1	6	anti-parallel
Strand 3	D	66	71	parallel
Strand 4	D	41	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VZW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VZW