Analysis of interatomic Contacts of Structural Units in PDB entry:
5W0A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W0A entry

There are 2 chains in PDB entry 5W0A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1GLY 373
B
 GLN 1GLY 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5W0A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 39Right-handed 310
Helix 2
AA2
A
62 70Right-handed alpha
Helix 3
AA3
A
162 167Right-handed 310
Helix 4
AA4
A
293 299Right-handed 310
Helix 5
AA5
A
302 312Right-handed alpha
Helix 6
AA6
A
327 332Right-handed alpha
Helix 7
AA7
A
333 336Right-handed 310
Helix 8
AA8
A
344 352Right-handed alpha
Helix 9
AA9
B
36 39Right-handed 310
Helix 10
AB1
B
62 70Right-handed alpha
Helix 11
AB2
B
162 167Right-handed 310
Helix 12
AB3
B
228 232Right-handed 310
Helix 13
AB4
B
294 299Right-handed 310
Helix 14
AB5
B
302 312Right-handed alpha
Helix 15
AB6
B
327 332Right-handed alpha
Helix 16
AB7
B
333 336Right-handed 310
Helix 17
AB8
B
344 352Right-handed alpha
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There are 14 sheets in PDB entry 5W0A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
71 72parallel
Strand 3
A
41 42anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 28first strand
Strand 2
A
16 20anti-parallel
Strand 3
A
356 365parallel
Strand 4
A
127 133anti-parallel
Strand 5
A
249 257anti-parallel
Strand 6
A
266 275anti-parallel
Strand 7
A
278 280anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
88 92anti-parallel
Strand 3
A
356 365anti-parallel
Strand 4
A
127 133anti-parallel
Strand 5
A
249 257anti-parallel
Strand 6
A
266 275anti-parallel
Strand 7
A
288 290anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
108 112anti-parallel
Strand 3
A
314 320anti-parallel
Strand 4
A
142 148anti-parallel
Strand 5
A
196 202anti-parallel
Strand 6
A
207 212anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
102 103anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
243 244parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
71 72parallel
Strand 3
B
41 42anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 28first strand
Strand 2
B
16 20anti-parallel
Strand 3
B
356 365parallel
Strand 4
B
127 133anti-parallel
Strand 5
B
249 257anti-parallel
Strand 6
B
266 275anti-parallel
Strand 7
B
278 280anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 85first strand
Strand 2
B
88 92anti-parallel
Strand 3
B
356 365anti-parallel
Strand 4
B
127 133anti-parallel
Strand 5
B
249 257anti-parallel
Strand 6
B
266 275anti-parallel
Strand 7
B
288 290anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
108 112anti-parallel
Strand 3
B
313 320anti-parallel
Strand 4
B
120 121anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
108 112anti-parallel
Strand 3
B
313 320anti-parallel
Strand 4
B
142 148anti-parallel
Strand 5
B
196 202anti-parallel
Strand 6
B
207 212anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
102 103anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 181first strand
Strand 2
B
184 185anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 238first strand
Strand 2
B
243 244parallel
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