Analysis of interatomic Contacts of Structural Units in PDB entry:
5W0K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5W0K entry

There are 10 chains in PDB entry 5W0K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 20	TYR 674
B	ALA 25	ALA 132
H	GLU 1	ASP 217
L	ASP 1	ASN 210
X	PRO 48	TRP 81
C	LEU 20	TYR 674
D	ALA 25	ARG 130
E	GLU 1	ARG 216
F	ASP 1	ASN 212
Y	GLU 51	TRP 81

There are 63 helices in PDB entry 5W0K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	47	Right-handed alpha
Helix 2	AA2	A	51	59	Right-handed alpha
Helix 3	AA3	A	64	75	Right-handed alpha
Helix 4	AA4	A	123	131	Right-handed alpha
Helix 5	AA5	A	141	146	Right-handed alpha
Helix 6	AA6	A	212	215	Right-handed 310
Helix 7	AA7	A	231	239	Right-handed alpha
Helix 8	AA8	A	245	256	Right-handed alpha
Helix 9	AA9	A	257	274	Right-handed alpha
Helix 10	AB1	A	284	308	Right-handed alpha
Helix 11	AB2	A	315	336	Right-handed alpha
Helix 12	AB3	A	345	357	Right-handed alpha
Helix 13	AB4	A	360	367	Right-handed 310
Helix 14	AB5	A	368	383	Right-handed alpha
Helix 15	AB6	A	391	407	Right-handed alpha
Helix 16	AB7	A	414	434	Right-handed alpha
Helix 17	AB8	A	439	454	Right-handed alpha
Helix 18	AB9	A	455	468	Right-handed alpha
Helix 19	AC1	A	470	474	Right-handed 310
Helix 20	AC2	A	476	481	Right-handed 310
Helix 21	AC3	A	487	495	Right-handed alpha
Helix 22	AC4	A	502	517	Right-handed alpha
Helix 23	AC5	A	636	646	Right-handed alpha
Helix 24	AC6	B	82	96	Right-handed alpha
Helix 25	AC7	B	101	118	Right-handed alpha
Helix 26	AC8	B	119	123	Right-handed 310
Helix 27	AC9	H	28	32	Right-handed 310
Helix 28	AD1	H	87	91	Right-handed 310
Helix 29	AD2	L	79	83	Right-handed 310
Helix 30	AD3	L	121	127	Right-handed alpha
Helix 31	AD4	L	183	189	Right-handed alpha
Helix 32	AD5	C	40	46	Right-handed alpha
Helix 33	AD6	C	51	60	Right-handed alpha
Helix 34	AD7	C	64	75	Right-handed alpha
Helix 35	AD8	C	123	131	Right-handed alpha
Helix 36	AD9	C	212	216	Right-handed alpha
Helix 37	AE1	C	231	239	Right-handed alpha
Helix 38	AE2	C	245	256	Right-handed alpha
Helix 39	AE3	C	257	273	Right-handed alpha
Helix 40	AE4	C	284	307	Right-handed alpha
Helix 41	AE5	C	315	336	Right-handed alpha
Helix 42	AE6	C	345	357	Right-handed alpha
Helix 43	AE7	C	358	359	Right-handed 310
Helix 44	AE8	C	360	367	Right-handed 310
Helix 45	AE9	C	368	383	Right-handed alpha
Helix 46	AF1	C	391	407	Right-handed alpha
Helix 47	AF2	C	414	434	Right-handed alpha
Helix 48	AF3	C	439	454	Right-handed alpha
Helix 49	AF4	C	455	468	Right-handed alpha
Helix 50	AF5	C	470	474	Right-handed 310
Helix 51	AF6	C	476	481	Right-handed 310
Helix 52	AF7	C	487	495	Right-handed alpha
Helix 53	AF8	C	502	517	Right-handed alpha
Helix 54	AF9	C	636	646	Right-handed alpha
Helix 55	AG1	D	82	96	Right-handed alpha
Helix 56	AG2	D	101	118	Right-handed alpha
Helix 57	AG3	D	119	123	Right-handed 310
Helix 58	AG4	E	28	32	Right-handed 310
Helix 59	AG5	E	87	91	Right-handed 310
Helix 60	AG6	F	79	83	Right-handed 310
Helix 61	AG7	F	121	127	Right-handed alpha
Helix 62	AG8	F	183	189	Right-handed alpha
Helix 63	AG9	Y	66	71	Right-handed alpha

There are 34 sheets in PDB entry 5W0K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	39	first strand
Strand 2	A	22	29	anti-parallel
Strand 3	B	47	50	parallel
Strand 4	B	61	65	anti-parallel
Strand 5	B	77	81	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	119	122	parallel
Strand 3	A	312	314	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	136	first strand
Strand 2	A	152	154	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	221	first strand
Strand 2	A	224	230	anti-parallel
Strand 3	A	191	200	anti-parallel
Strand 4	A	177	185	anti-parallel
Strand 5	A	167	173	anti-parallel
Strand 6	A	156	162	anti-parallel
Strand 7	A	339	341	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	547	first strand
Strand 2	A	550	555	anti-parallel
Strand 3	A	578	583	anti-parallel
Strand 4	A	566	567	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	602	first strand
Strand 2	A	667	670	parallel
Strand 3	A	656	661	anti-parallel
Strand 4	A	618	623	anti-parallel
Strand 5	A	627	633	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	21	25	anti-parallel
Strand 3	H	78	81	anti-parallel
Strand 4	H	70	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	11	first strand
Strand 2	H	110	113	parallel
Strand 3	H	93	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	11	first strand
Strand 2	H	110	113	parallel
Strand 3	H	93	99	anti-parallel
Strand 4	H	103	106	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	127	first strand
Strand 2	H	138	148	anti-parallel
Strand 3	H	177	187	anti-parallel
Strand 4	H	166	168	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	127	first strand
Strand 2	H	138	148	anti-parallel
Strand 3	H	177	187	anti-parallel
Strand 4	H	172	174	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	157	first strand
Strand 2	H	198	202	anti-parallel
Strand 3	H	207	210	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	150	first strand
Strand 2	L	192	197	anti-parallel
Strand 3	L	205	209	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	39	first strand
Strand 2	C	22	28	anti-parallel
Strand 3	D	47	50	parallel
Strand 4	D	61	65	anti-parallel
Strand 5	D	77	81	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	119	122	parallel
Strand 3	C	312	314	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand
Strand 2	C	152	154	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	221	first strand
Strand 2	C	224	230	anti-parallel
Strand 3	C	191	200	anti-parallel
Strand 4	C	177	185	anti-parallel
Strand 5	C	167	173	anti-parallel
Strand 6	C	158	162	anti-parallel
Strand 7	C	339	340	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	547	first strand
Strand 2	C	550	555	anti-parallel
Strand 3	C	578	583	anti-parallel
Strand 4	C	566	567	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	601	602	first strand
Strand 2	C	667	670	parallel
Strand 3	C	656	661	anti-parallel
Strand 4	C	618	623	anti-parallel
Strand 5	C	627	633	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	23	25	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	110	114	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	E	78	83	anti-parallel
Strand 3	E	70	73	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	127	first strand
Strand 2	E	138	148	anti-parallel
Strand 3	E	177	187	anti-parallel
Strand 4	E	166	168	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	127	first strand
Strand 2	E	138	148	anti-parallel
Strand 3	E	177	187	anti-parallel
Strand 4	E	172	174	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	157	first strand
Strand 2	E	197	202	anti-parallel
Strand 3	E	207	212	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	97	98	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	129	139	anti-parallel
Strand 3	F	173	182	anti-parallel
Strand 4	F	159	163	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	148	first strand
Strand 2	F	191	197	anti-parallel
Strand 3	F	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5W0K

Analysis of interatomic Contacts of Structural Units in PDB entry:
5W0K