Analysis of interatomic Contacts of Structural Units in PDB entry:
5W0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W0M entry

There are 2 chains in PDB entry 5W0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 987ARG 1363
B
 GLU 988LEU 1237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5W0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
994 1013Right-handed alpha
Helix 2
AA2
A
1015 1035Right-handed alpha
Helix 3
AA3
A
1046 1049Right-handed 310
Helix 4
AA4
A
1070 1074Right-handed 310
Helix 5
AA5
A
1075 1088Right-handed alpha
Helix 6
AA6
A
1124 1139Right-handed alpha
Helix 7
AA7
A
1141 1159Right-handed alpha
Helix 8
AA8
A
1162 1166Right-handed 310
Helix 9
AA9
A
1169 1184Right-handed alpha
Helix 10
AB1
A
1191 1195Right-handed 310
Helix 11
AB2
A
1216 1218Right-handed 310
Helix 12
AB3
A
1219 1224Right-handed alpha
Helix 13
AB4
A
1233 1248Right-handed alpha
Helix 14
AB5
A
1266 1270Right-handed alpha
Helix 15
AB6
A
1293 1313Right-handed alpha
Helix 16
AB7
A
1324 1330Right-handed alpha
Helix 17
AB8
A
1331 1336Right-handed alpha
Helix 18
AB9
A
1356 1360Right-handed 310
Helix 19
AC1
B
994 1013Right-handed alpha
Helix 20
AC2
B
1015 1034Right-handed alpha
Helix 21
AC3
B
1046 1049Right-handed 310
Helix 22
AC4
B
1075 1088Right-handed alpha
Helix 23
AC5
B
1124 1139Right-handed alpha
Helix 24
AC6
B
1141 1158Right-handed alpha
Helix 25
AC7
B
1162 1166Right-handed 310
Helix 26
AC8
B
1169 1184Right-handed alpha
Helix 27
AC9
B
1191 1195Right-handed 310
Helix 28
AD1
B
1216 1218Right-handed 310
Helix 29
AD2
B
1219 1224Right-handed alpha
Helix 30
AD3
B
1233 1248Right-handed alpha
Helix 31
AD4
B
1266 1270Right-handed alpha
Helix 32
AD5
B
1293 1313Right-handed alpha
Helix 33
AD6
B
1325 1330Right-handed alpha
Helix 34
AD7
B
1331 1336Right-handed alpha
Helix 35
AD8
C
994 1013Right-handed alpha
Helix 36
AD9
C
1015 1035Right-handed alpha
Helix 37
AE1
C
1046 1049Right-handed 310
Helix 38
AE2
C
1075 1088Right-handed alpha
Helix 39
AE3
C
1124 1139Right-handed alpha
Helix 40
AE4
C
1141 1159Right-handed alpha
Helix 41
AE5
C
1162 1166Right-handed 310
Helix 42
AE6
C
1169 1184Right-handed alpha
Helix 43
AE7
C
1191 1195Right-handed 310
Helix 44
AE8
C
1216 1218Right-handed 310
Helix 45
AE9
C
1219 1224Right-handed alpha
Helix 46
AF1
C
1233 1248Right-handed alpha
Helix 47
AF2
C
1266 1270Right-handed alpha
Helix 48
AF3
C
1293 1313Right-handed alpha
Helix 49
AF4
C
1324 1330Right-handed alpha
Helix 50
AF5
C
1331 1336Right-handed alpha
Helix 51
AF6
C
1356 1360Right-handed 310
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There are 9 sheets in PDB entry 5W0M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1040 1045first strand
Strand 2
A
1059 1065anti-parallel
Strand 3
A
1116 1122parallel
Strand 4
A
1106 1111anti-parallel
Strand 5
A
1093 1099anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1205 1206first strand
Strand 2
A
1209 1210anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1254 1255first strand
Strand 2
A
1264 1265anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1040 1045first strand
Strand 2
B
1059 1065anti-parallel
Strand 3
B
1116 1122parallel
Strand 4
B
1106 1111anti-parallel
Strand 5
B
1093 1099anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1205 1206first strand
Strand 2
B
1209 1210anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1264 1265first strand
Strand 2
B
1254 1257anti-parallel
Strand 3
B
1278 1279parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1040 1045first strand
Strand 2
C
1059 1065anti-parallel
Strand 3
C
1116 1122parallel
Strand 4
C
1106 1111anti-parallel
Strand 5
C
1093 1099anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1205 1206first strand
Strand 2
C
1209 1210anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1254 1255first strand
Strand 2
C
1264 1265anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il