Analysis of interatomic Contacts of Structural Units in PDB entry:
5W0O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W0O entry

There are 4 chains in PDB entry 5W0O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 987THR 1336
B
 PRO 992PRO 1332
C
 G 1 U 15
D
 G 1 U 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5W0O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
994 1013Right-handed alpha
Helix 2
AA2
A
1015 1037Right-handed alpha
Helix 3
AA3
A
1046 1049Right-handed 310
Helix 4
AA4
A
1075 1088Right-handed alpha
Helix 5
AA5
A
1124 1141Right-handed alpha
Helix 6
AA6
A
1141 1158Right-handed alpha
Helix 7
AA7
A
1162 1166Right-handed 310
Helix 8
AA8
A
1169 1184Right-handed alpha
Helix 9
AA9
A
1191 1195Right-handed 310
Helix 10
AB1
A
1219 1224Right-handed alpha
Helix 11
AB2
A
1233 1248Right-handed alpha
Helix 12
AB3
A
1293 1313Right-handed alpha
Helix 13
AB4
A
1324 1330Right-handed alpha
Helix 14
AB5
B
998 1013Right-handed alpha
Helix 15
AB6
B
1015 1035Right-handed alpha
Helix 16
AB7
B
1046 1049Right-handed 310
Helix 17
AB8
B
1075 1088Right-handed alpha
Helix 18
AB9
B
1124 1141Right-handed alpha
Helix 19
AC1
B
1142 1158Right-handed alpha
Helix 20
AC2
B
1162 1166Right-handed 310
Helix 21
AC3
B
1169 1184Right-handed alpha
Helix 22
AC4
B
1191 1195Right-handed 310
Helix 23
AC5
B
1219 1224Right-handed alpha
Helix 24
AC6
B
1233 1248Right-handed alpha
Helix 25
AC7
B
1265 1270Right-handed alpha
Helix 26
AC8
B
1293 1311Right-handed alpha
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There are 6 sheets in PDB entry 5W0O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1040 1045first strand
Strand 2
A
1059 1065anti-parallel
Strand 3
A
1117 1122parallel
Strand 4
A
1106 1111anti-parallel
Strand 5
A
1093 1099anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1205 1206first strand
Strand 2
A
1209 1210anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1254 1255first strand
Strand 2
A
1264 1265anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1040 1045first strand
Strand 2
B
1059 1065anti-parallel
Strand 3
B
1117 1122parallel
Strand 4
B
1106 1111anti-parallel
Strand 5
B
1093 1099anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1205 1206first strand
Strand 2
B
1209 1210anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1256 1257first strand
Strand 2
B
1278 1279parallel
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