Analysis of interatomic Contacts of Structural Units in PDB entry:
5W0P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5W0P entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 5W0P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN -159	ALA 335
A	VAL 337	VAL 337
A	LYS 339	GLU 2362
B	ASN -159	ALA 298

There are103 helices in PDB entry 5W0P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-159	-149	Right-handed alpha
Helix 2	AA2	A	-123	-110	Right-handed alpha
Helix 3	AA3	A	-102	-80	Right-handed alpha
Helix 4	AA4	A	-78	-70	Right-handed alpha
Helix 5	AA5	A	-69	-54	Right-handed alpha
Helix 6	AA6	A	-54	-49	Right-handed alpha
Helix 7	AA7	A	-47	-38	Right-handed alpha
Helix 8	AA8	A	-36	-26	Right-handed alpha
Helix 9	AA9	A	-25	-19	Right-handed alpha
Helix 10	AB1	A	-19	-5	Right-handed alpha
Helix 11	AB2	A	34	65	Right-handed alpha
Helix 12	AB3	A	66	69	Right-handed 310
Helix 13	AB4	A	73	89	Right-handed alpha
Helix 14	AB5	A	89	101	Right-handed alpha
Helix 15	AB6	A	105	141	Right-handed alpha
Helix 16	AB7	A	142	148	Right-handed alpha
Helix 17	AB8	A	149	169	Right-handed alpha
Helix 18	AB9	A	169	174	Right-handed alpha
Helix 19	AC1	A	199	210	Right-handed alpha
Helix 20	AC2	A	212	237	Right-handed alpha
Helix 21	AC3	A	240	278	Right-handed alpha
Helix 22	AC4	A	284	307	Right-handed alpha
Helix 23	AC5	A	310	322	Right-handed alpha
Helix 24	AC6	A	2070	2077	Right-handed alpha
Helix 25	AC7	A	2102	2112	Right-handed alpha
Helix 26	AC8	A	2284	2289	Right-handed alpha
Helix 27	AC9	B	-158	-150	Right-handed alpha
Helix 28	AD1	B	-102	-80	Right-handed alpha
Helix 29	AD2	B	-78	-70	Right-handed alpha
Helix 30	AD3	B	-69	-54	Right-handed alpha
Helix 31	AD4	B	-54	-49	Right-handed alpha
Helix 32	AD5	B	-46	-38	Right-handed alpha
Helix 33	AD6	B	-36	-26	Right-handed alpha
Helix 34	AD7	B	-25	-19	Right-handed alpha
Helix 35	AD8	B	-19	-5	Right-handed alpha
Helix 36	AD9	B	34	65	Right-handed alpha
Helix 37	AE1	B	66	69	Right-handed 310
Helix 38	AE2	B	70	72	Right-handed 310
Helix 39	AE3	B	73	89	Right-handed alpha
Helix 40	AE4	B	89	101	Right-handed alpha
Helix 41	AE5	B	105	141	Right-handed alpha
Helix 42	AE6	B	142	148	Right-handed alpha
Helix 43	AE7	B	149	169	Right-handed alpha
Helix 44	AE8	B	169	174	Right-handed alpha
Helix 45	AE9	B	199	210	Right-handed alpha
Helix 46	AF1	B	212	237	Right-handed alpha
Helix 47	AF2	B	240	278	Right-handed alpha
Helix 48	AF3	B	285	307	Right-handed alpha
Helix 49	AF4	B	310	323	Right-handed alpha
Helix 50	AF5	B	330	334	Right-handed alpha
Helix 51	AF6	B	2070	2077	Right-handed alpha
Helix 52	AF7	B	2102	2112	Right-handed alpha
Helix 53	AF8	B	2284	2289	Right-handed alpha
Helix 54	AF9	C	-158	-150	Right-handed alpha
Helix 55	AG1	C	-123	-110	Right-handed alpha
Helix 56	AG2	C	-102	-80	Right-handed alpha
Helix 57	AG3	C	-78	-70	Right-handed alpha
Helix 58	AG4	C	-69	-54	Right-handed alpha
Helix 59	AG5	C	-54	-49	Right-handed alpha
Helix 60	AG6	C	-47	-38	Right-handed alpha
Helix 61	AG7	C	-36	-26	Right-handed alpha
Helix 62	AG8	C	-25	-19	Right-handed alpha
Helix 63	AG9	C	-19	-5	Right-handed alpha
Helix 64	AH1	C	34	65	Right-handed alpha
Helix 65	AH2	C	70	72	Right-handed 310
Helix 66	AH3	C	73	89	Right-handed alpha
Helix 67	AH4	C	89	101	Right-handed alpha
Helix 68	AH5	C	105	141	Right-handed alpha
Helix 69	AH6	C	141	148	Right-handed alpha
Helix 70	AH7	C	149	174	Right-handed alpha
Helix 71	AH8	C	199	211	Right-handed alpha
Helix 72	AH9	C	212	237	Right-handed alpha
Helix 73	AI1	C	240	278	Right-handed alpha
Helix 74	AI2	C	284	307	Right-handed alpha
Helix 75	AI3	C	310	322	Right-handed alpha
Helix 76	AI4	C	330	334	Right-handed alpha
Helix 77	AI5	C	2070	2077	Right-handed alpha
Helix 78	AI6	C	2102	2112	Right-handed alpha
Helix 79	AI7	C	2284	2289	Right-handed alpha
Helix 80	AI8	D	-84	-80	Right-handed alpha
Helix 81	AI9	D	-78	-70	Right-handed alpha
Helix 82	AJ1	D	-69	-54	Right-handed alpha
Helix 83	AJ2	D	-54	-49	Right-handed alpha
Helix 84	AJ3	D	-46	-38	Right-handed alpha
Helix 85	AJ4	D	-36	-26	Right-handed alpha
Helix 86	AJ5	D	-25	-19	Right-handed alpha
Helix 87	AJ6	D	-19	-5	Right-handed alpha
Helix 88	AJ7	D	34	65	Right-handed alpha
Helix 89	AJ8	D	66	69	Right-handed 310
Helix 90	AJ9	D	70	72	Right-handed 310
Helix 91	AK1	D	73	89	Right-handed alpha
Helix 92	AK2	D	89	101	Right-handed alpha
Helix 93	AK3	D	105	141	Right-handed alpha
Helix 94	AK4	D	141	148	Right-handed alpha
Helix 95	AK5	D	149	169	Right-handed alpha
Helix 96	AK6	D	169	174	Right-handed alpha
Helix 97	AK7	D	199	210	Right-handed alpha
Helix 98	AK8	D	212	237	Right-handed alpha
Helix 99	AK9	D	240	278	Right-handed alpha
Helix 100	AL1	D	284	307	Right-handed alpha
Helix 101	AL2	D	310	322	Right-handed alpha
Helix 102	AL3	D	2070	2077	Right-handed alpha
Helix 103	AL4	D	2102	2112	Right-handed alpha

There are 30 sheets in PDB entry 5W0P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-147	-142	first strand
Strand 2	A	-136	-133	anti-parallel
Strand 3	A	-130	-129	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	10	11	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	186	189	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	2013	2017	anti-parallel
Strand 3	A	2023	2027	anti-parallel
Strand 4	A	2042	2048	anti-parallel
Strand 5	A	2116	2121	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2031	2033	first strand
Strand 2	A	2171	2178	parallel
Strand 3	A	2144	2155	anti-parallel
Strand 4	A	2057	2068	anti-parallel
Strand 5	A	2083	2092	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2131	2133	first strand
Strand 2	A	2295	2297	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2190	2195	first strand
Strand 2	A	2204	2210	anti-parallel
Strand 3	A	2221	2229	anti-parallel
Strand 4	A	2273	2281	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2214	2216	first strand
Strand 2	A	2345	2357	parallel
Strand 3	A	2323	2337	anti-parallel
Strand 4	A	2235	2249	anti-parallel
Strand 5	A	2253	2265	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	10	11	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	181	first strand
Strand 2	B	186	189	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	2013	2017	anti-parallel
Strand 3	B	2023	2027	anti-parallel
Strand 4	B	2042	2048	anti-parallel
Strand 5	B	2116	2121	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2031	2033	first strand
Strand 2	B	2171	2178	parallel
Strand 3	B	2144	2155	anti-parallel
Strand 4	B	2057	2068	anti-parallel
Strand 5	B	2083	2092	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2131	2133	first strand
Strand 2	B	2295	2297	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2190	2195	first strand
Strand 2	B	2204	2210	anti-parallel
Strand 3	B	2221	2229	anti-parallel
Strand 4	B	2273	2281	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2214	2216	first strand
Strand 2	B	2345	2357	parallel
Strand 3	B	2323	2337	anti-parallel
Strand 4	B	2235	2249	anti-parallel
Strand 5	B	2253	2265	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	-147	-142	first strand
Strand 2	C	-136	-133	anti-parallel
Strand 3	C	-130	-127	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	10	11	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	186	189	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	341	first strand
Strand 2	C	2013	2017	anti-parallel
Strand 3	C	2023	2027	anti-parallel
Strand 4	C	2042	2048	anti-parallel
Strand 5	C	2116	2121	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2031	2033	first strand
Strand 2	C	2171	2178	parallel
Strand 3	C	2144	2155	anti-parallel
Strand 4	C	2057	2068	anti-parallel
Strand 5	C	2083	2092	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2131	2133	first strand
Strand 2	C	2295	2297	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2190	2195	first strand
Strand 2	C	2204	2210	anti-parallel
Strand 3	C	2221	2229	anti-parallel
Strand 4	C	2273	2281	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2214	2216	first strand
Strand 2	C	2345	2357	parallel
Strand 3	C	2323	2337	anti-parallel
Strand 4	C	2235	2249	anti-parallel
Strand 5	C	2253	2265	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	10	11	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	181	first strand
Strand 2	D	186	189	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	341	first strand
Strand 2	D	2013	2017	anti-parallel
Strand 3	D	2023	2027	anti-parallel
Strand 4	D	2042	2048	anti-parallel
Strand 5	D	2116	2121	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2031	2033	first strand
Strand 2	D	2171	2178	parallel
Strand 3	D	2144	2155	anti-parallel
Strand 4	D	2057	2068	anti-parallel
Strand 5	D	2083	2092	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2131	2133	first strand
Strand 2	D	2295	2297	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2190	2195	first strand
Strand 2	D	2204	2210	anti-parallel
Strand 3	D	2221	2229	anti-parallel
Strand 4	D	2273	2281	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2214	2216	first strand
Strand 2	D	2345	2357	parallel
Strand 3	D	2323	2337	anti-parallel
Strand 4	D	2235	2249	anti-parallel
Strand 5	D	2253	2265	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5W0P

Analysis of interatomic Contacts of Structural Units in PDB entry:
5W0P