Analysis of interatomic Contacts of Structural Units in PDB entry:
5W0U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5W0U entry

There are 4 chains in PDB entry 5W0U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ILE 3	GLN 1181
D	G 1	G 12
G	C 1	C 12
A	ILE 3	GLN 1181

There are 50 helices in PDB entry 5W0U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	17	33	Right-handed alpha
Helix 2	AA2	B	43	54	Right-handed alpha
Helix 3	AA3	B	65	74	Right-handed alpha
Helix 4	AA4	B	83	88	Right-handed alpha
Helix 5	AA5	B	89	90	Right-handed 310
Helix 6	AA6	B	91	92	Right-handed 310
Helix 7	AA7	B	93	98	Right-handed alpha
Helix 8	AA8	B	129	131	Right-handed 310
Helix 9	AA9	B	132	141	Right-handed alpha
Helix 10	AB1	B	154	164	Right-handed alpha
Helix 11	AB2	B	186	202	Right-handed alpha
Helix 12	AB3	B	210	220	Right-handed alpha
Helix 13	AB4	B	229	231	Right-handed 310
Helix 14	AB5	B	232	239	Right-handed alpha
Helix 15	AB6	B	273	284	Right-handed alpha
Helix 16	AB7	B	287	298	Right-handed alpha
Helix 17	AB8	B	305	313	Right-handed alpha
Helix 18	AB9	B	315	328	Right-handed alpha
Helix 19	AC1	B	336	354	Right-handed alpha
Helix 20	AC2	B	357	369	Right-handed alpha
Helix 21	AC3	B	1007	1015	Right-handed alpha
Helix 22	AC4	B	1056	1068	Right-handed alpha
Helix 23	AC5	B	1087	1101	Right-handed alpha
Helix 24	AC6	B	1121	1132	Right-handed alpha
Helix 25	AC7	B	1140	1151	Right-handed alpha
Helix 26	AC8	B	1164	1181	Right-handed alpha
Helix 27	AC9	A	18	33	Right-handed alpha
Helix 28	AD1	A	43	54	Right-handed alpha
Helix 29	AD2	A	65	74	Right-handed alpha
Helix 30	AD3	A	83	88	Right-handed alpha
Helix 31	AD4	A	91	96	Right-handed alpha
Helix 32	AD5	A	129	131	Right-handed 310
Helix 33	AD6	A	132	141	Right-handed alpha
Helix 34	AD7	A	154	164	Right-handed alpha
Helix 35	AD8	A	186	202	Right-handed alpha
Helix 36	AD9	A	210	220	Right-handed alpha
Helix 37	AE1	A	229	231	Right-handed 310
Helix 38	AE2	A	232	239	Right-handed alpha
Helix 39	AE3	A	273	284	Right-handed alpha
Helix 40	AE4	A	287	298	Right-handed alpha
Helix 41	AE5	A	305	313	Right-handed alpha
Helix 42	AE6	A	315	328	Right-handed alpha
Helix 43	AE7	A	336	354	Right-handed alpha
Helix 44	AE8	A	357	369	Right-handed alpha
Helix 45	AE9	A	1007	1015	Right-handed alpha
Helix 46	AF1	A	1056	1068	Right-handed alpha
Helix 47	AF2	A	1087	1101	Right-handed alpha
Helix 48	AF3	A	1120	1132	Right-handed alpha
Helix 49	AF4	A	1140	1151	Right-handed alpha
Helix 50	AF5	A	1164	1181	Right-handed alpha

There are 12 sheets in PDB entry 5W0U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	7	11	parallel
Strand 3	B	60	64	parallel
Strand 4	B	259	267	anti-parallel
Strand 5	B	106	112	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	7	11	parallel
Strand 3	B	60	64	parallel
Strand 4	B	259	267	anti-parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	103	104	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	223	228	parallel
Strand 3	B	115	119	anti-parallel
Strand 4	B	243	246	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	254	255	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1046	1049	first strand
Strand 2	B	1029	1034	anti-parallel
Strand 3	B	1076	1084	anti-parallel
Strand 4	B	1104	1112	parallel
Strand 5	B	1135	1138	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	7	11	parallel
Strand 3	A	60	64	parallel
Strand 4	A	259	267	anti-parallel
Strand 5	A	106	112	anti-parallel
Strand 6	A	302	303	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	7	11	parallel
Strand 3	A	60	64	parallel
Strand 4	A	259	267	anti-parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	103	104	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	228	first strand
Strand 2	A	115	119	anti-parallel
Strand 3	A	243	246	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	251	first strand
Strand 2	A	254	255	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1046	1049	first strand
Strand 2	A	1029	1034	anti-parallel
Strand 3	A	1076	1084	anti-parallel
Strand 4	A	1104	1112	parallel
Strand 5	A	1135	1138	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5W0U

Analysis of interatomic Contacts of Structural Units in PDB entry:
5W0U