Analysis of interatomic Contacts of Structural Units in PDB entry:
5W11

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5W11 entry

There are 2 chains in PDB entry 5W11 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	LEU 437
B	ASN 2	GLY 440

There are 20 helices in PDB entry 5W11. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	39	Right-handed 310
Helix 2	AA2	A	63	70	Right-handed alpha
Helix 3	AA3	A	77	83	Right-handed alpha
Helix 4	AA4	A	165	169	Right-handed 310
Helix 5	AA5	A	242	245	Right-handed 310
Helix 6	AA6	A	332	343	Right-handed alpha
Helix 7	AA7	A	346	351	Right-handed alpha
Helix 8	AA8	A	352	363	Right-handed alpha
Helix 9	AA9	A	379	384	Right-handed alpha
Helix 10	AB1	A	407	415	Right-handed alpha
Helix 11	AB2	B	36	39	Right-handed 310
Helix 12	AB3	B	63	70	Right-handed alpha
Helix 13	AB4	B	77	83	Right-handed alpha
Helix 14	AB5	B	164	169	Right-handed 310
Helix 15	AB6	B	242	245	Right-handed 310
Helix 16	AB7	B	331	343	Right-handed alpha
Helix 17	AB8	B	346	351	Right-handed alpha
Helix 18	AB9	B	352	363	Right-handed alpha
Helix 19	AC1	B	379	384	Right-handed alpha
Helix 20	AC2	B	407	415	Right-handed alpha

There are 21 sheets in PDB entry 5W11. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	71	73	parallel
Strand 3	A	41	43	anti-parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	316	first strand
Strand 2	A	301	310	anti-parallel
Strand 3	A	287	295	anti-parallel
Strand 4	A	126	133	anti-parallel
Strand 5	A	419	429	anti-parallel
Strand 6	A	13	19	parallel
Strand 7	A	25	34	anti-parallel
Strand 8	A	107	114	anti-parallel
Strand 9	A	365	372	anti-parallel
Strand 10	A	142	148	anti-parallel
Strand 11	A	213	219	anti-parallel
Strand 12	A	224	229	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	316	first strand
Strand 2	A	301	310	anti-parallel
Strand 3	A	330	331	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	90	94	anti-parallel
Strand 3	A	365	372	first strand
Strand 4	A	13	19	first strand
Strand 5	A	25	34	anti-parallel
Strand 6	A	107	114	anti-parallel
Strand 7	A	117	118	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	365	372	anti-parallel
Strand 3	A	107	114	anti-parallel
Strand 4	A	117	118	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	55	56	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	103	105	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	184	first strand
Strand 2	A	187	188	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	203	204	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	210	first strand
Strand 2	A	237	240	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	281	282	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	71	73	parallel
Strand 3	B	41	43	anti-parallel

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There are 12 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	316	first strand
Strand 2	B	301	310	anti-parallel
Strand 3	B	287	295	anti-parallel
Strand 4	B	126	133	anti-parallel
Strand 5	B	419	429	anti-parallel
Strand 6	B	13	19	parallel
Strand 7	B	25	34	anti-parallel
Strand 8	B	107	114	anti-parallel
Strand 9	B	365	373	anti-parallel
Strand 10	B	141	148	anti-parallel
Strand 11	B	213	219	anti-parallel
Strand 12	B	224	229	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	90	94	anti-parallel
Strand 3	B	419	429	anti-parallel
Strand 4	B	13	19	parallel
Strand 5	B	25	34	anti-parallel
Strand 6	B	107	114	anti-parallel
Strand 7	B	117	118	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	365	373	anti-parallel
Strand 3	B	107	114	anti-parallel
Strand 4	B	117	118	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	55	56	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	103	105	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	184	first strand
Strand 2	B	187	188	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	203	204	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	210	first strand
Strand 2	B	237	240	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	276	first strand
Strand 2	B	281	282	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5W11

Analysis of interatomic Contacts of Structural Units in PDB entry:
5W11