Analysis of interatomic Contacts of Structural Units in PDB entry:
5W16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W16 entry

There are 4 chains in PDB entry 5W16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 257
B
 LYS 2LEU 257
C
 LYS 2LEU 257
D
 LYS 2LEU 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 5W16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 28Right-handed alpha
Helix 2
AA2
A
48 66Right-handed alpha
Helix 3
AA3
A
75 83Right-handed alpha
Helix 4
AA4
A
84 90Right-handed alpha
Helix 5
AA5
A
98 106Right-handed alpha
Helix 6
AA6
A
116 123Right-handed alpha
Helix 7
AA7
A
124 128Right-handed 310
Helix 8
AA8
A
139 146Right-handed alpha
Helix 9
AA9
A
151 163Right-handed alpha
Helix 10
AB1
A
178 181Right-handed 310
Helix 11
AB2
A
182 190Right-handed alpha
Helix 12
AB3
A
198 213Right-handed alpha
Helix 13
AB4
A
231 242Right-handed alpha
Helix 14
AB5
A
253 257Right-handed 310
Helix 15
AB6
B
17 28Right-handed alpha
Helix 16
AB7
B
48 66Right-handed alpha
Helix 17
AB8
B
75 83Right-handed alpha
Helix 18
AB9
B
84 90Right-handed alpha
Helix 19
AC1
B
98 106Right-handed alpha
Helix 20
AC2
B
116 123Right-handed alpha
Helix 21
AC3
B
124 128Right-handed 310
Helix 22
AC4
B
139 146Right-handed alpha
Helix 23
AC5
B
151 163Right-handed alpha
Helix 24
AC6
B
178 181Right-handed 310
Helix 25
AC7
B
182 190Right-handed alpha
Helix 26
AC8
B
198 213Right-handed alpha
Helix 27
AC9
B
231 242Right-handed alpha
Helix 28
AD1
B
253 257Right-handed 310
Helix 29
AD2
C
17 28Right-handed alpha
Helix 30
AD3
C
48 66Right-handed alpha
Helix 31
AD4
C
75 83Right-handed alpha
Helix 32
AD5
C
84 90Right-handed alpha
Helix 33
AD6
C
98 106Right-handed alpha
Helix 34
AD7
C
116 123Right-handed alpha
Helix 35
AD8
C
124 128Right-handed 310
Helix 36
AD9
C
139 146Right-handed alpha
Helix 37
AE1
C
151 163Right-handed alpha
Helix 38
AE2
C
178 181Right-handed 310
Helix 39
AE3
C
182 190Right-handed alpha
Helix 40
AE4
C
198 213Right-handed alpha
Helix 41
AE5
C
231 242Right-handed alpha
Helix 42
AE6
C
253 257Right-handed 310
Helix 43
AE7
D
17 28Right-handed alpha
Helix 44
AE8
D
48 66Right-handed alpha
Helix 45
AE9
D
75 83Right-handed alpha
Helix 46
AF1
D
84 90Right-handed alpha
Helix 47
AF2
D
98 106Right-handed alpha
Helix 48
AF3
D
116 122Right-handed alpha
Helix 49
AF4
D
123 128Right-handed 310
Helix 50
AF5
D
139 146Right-handed alpha
Helix 51
AF6
D
151 163Right-handed alpha
Helix 52
AF7
D
178 181Right-handed 310
Helix 53
AF8
D
182 190Right-handed alpha
Helix 54
AF9
D
198 213Right-handed alpha
Helix 55
AG1
D
231 242Right-handed alpha
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There are 8 sheets in PDB entry 5W16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
70 73parallel
Strand 3
A
8 12parallel
Strand 4
A
33 37parallel
Strand 5
A
224 228parallel
Strand 6
A
248 251parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
111 115parallel
Strand 3
A
171 175parallel
Strand 4
A
194 197parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
70 73parallel
Strand 3
B
8 12parallel
Strand 4
B
33 37parallel
Strand 5
B
224 228parallel
Strand 6
B
249 251parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
111 115parallel
Strand 3
B
171 175parallel
Strand 4
B
194 197parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 96first strand
Strand 2
C
70 73parallel
Strand 3
C
8 12parallel
Strand 4
C
32 37parallel
Strand 5
C
223 228parallel
Strand 6
C
248 251parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 136first strand
Strand 2
C
111 115parallel
Strand 3
C
171 175parallel
Strand 4
C
194 197parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 95first strand
Strand 2
D
71 73parallel
Strand 3
D
8 12parallel
Strand 4
D
32 37parallel
Strand 5
D
223 228parallel
Strand 6
D
248 251parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
133 136first strand
Strand 2
D
111 115parallel
Strand 3
D
171 174parallel
Strand 4
D
194 197parallel
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