Analysis of interatomic Contacts of Structural Units in PDB entry:
5W1E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W1E entry

There is 1 chain in PDB entry 5W1E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 12VAL 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5W1E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 31Right-handed alpha
Helix 2
AA2
A
38 46Right-handed alpha
Helix 3
AA3
A
48 62Right-handed alpha
Helix 4
AA4
A
78 90Right-handed alpha
Helix 5
AA5
A
90 107Right-handed alpha
Helix 6
AA6
A
145 147Right-handed 310
Helix 7
AA7
A
148 155Right-handed alpha
Helix 8
AA8
A
158 172Right-handed alpha
Helix 9
AA9
A
192 204Right-handed alpha
Helix 10
AB1
A
245 270Right-handed alpha
Helix 11
AB2
A
286 295Right-handed alpha
Helix 12
AB3
A
296 298Right-handed 310
Helix 13
AB4
A
299 310Right-handed alpha
Helix 14
AB5
A
320 329Right-handed alpha
Helix 15
AB6
A
331 345Right-handed alpha
Helix 16
AB7
A
360 365Right-handed 310
Helix 17
AB8
A
366 371Right-handed alpha
Helix 18
AB9
A
374 391Right-handed alpha
Helix 19
AC1
A
429 432Right-handed 310
Helix 20
AC2
A
433 440Right-handed alpha
Helix 21
AC3
A
442 449Right-handed alpha
Helix 22
AC4
A
489 516Right-handed alpha
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There are 4 sheets in PDB entry 5W1E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
71 74anti-parallel
Strand 3
A
65 68anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
119 126anti-parallel
Strand 3
A
109 116anti-parallel
Strand 4
A
231 240anti-parallel
Strand 5
A
216 224anti-parallel
Strand 6
A
206 209anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
355 358anti-parallel
Strand 3
A
348 351anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 412first strand
Strand 2
A
393 399anti-parallel
Strand 3
A
475 484anti-parallel
Strand 4
A
461 469anti-parallel
Strand 5
A
451 456anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il