Analysis of interatomic Contacts of Structural Units in PDB entry:
5W1I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W1I entry

There are 4 chains in PDB entry 5W1I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 A -27 G 13
A
 LYS 14VAL 1378
D
 A -27 G 13
C
 LYS 14VAL 1378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are147 helices in PDB entry 5W1I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 61Right-handed alpha
Helix 2
AA2
A
80 94Right-handed alpha
Helix 3
AA3
A
99 104Right-handed alpha
Helix 4
AA4
A
105 110Right-handed alpha
Helix 5
AA5
A
111 128Right-handed alpha
Helix 6
AA6
A
135 140Right-handed 310
Helix 7
AA7
A
142 153Right-handed alpha
Helix 8
AA8
A
154 164Right-handed alpha
Helix 9
AA9
A
171 183Right-handed alpha
Helix 10
AB1
A
184 188Right-handed 310
Helix 11
AB2
A
189 204Right-handed alpha
Helix 12
AB3
A
214 219Right-handed alpha
Helix 13
AB4
A
219 228Right-handed alpha
Helix 14
AB5
A
229 234Right-handed alpha
Helix 15
AB6
A
235 242Right-handed alpha
Helix 16
AB7
A
264 285Right-handed alpha
Helix 17
AB8
A
288 309Right-handed alpha
Helix 18
AB9
A
312 316Right-handed 310
Helix 19
AC1
A
323 333Right-handed alpha
Helix 20
AC2
A
353 386Right-handed alpha
Helix 21
AC3
A
394 414Right-handed alpha
Helix 22
AC4
A
421 424Right-handed 310
Helix 23
AC5
A
425 456Right-handed alpha
Helix 24
AC6
A
457 461Right-handed 310
Helix 25
AC7
A
474 478Right-handed 310
Helix 26
AC8
A
482 515Right-handed alpha
Helix 27
AC9
A
523 527Right-handed 310
Helix 28
AD1
A
545 549Right-handed 310
Helix 29
AD2
A
552 554Right-handed 310
Helix 30
AD3
A
555 561Right-handed alpha
Helix 31
AD4
A
562 565Right-handed 310
Helix 32
AD5
A
566 571Right-handed 310
Helix 33
AD6
A
574 579Right-handed alpha
Helix 34
AD7
A
584 600Right-handed alpha
Helix 35
AD8
A
617 630Right-handed alpha
Helix 36
AD9
A
631 643Right-handed alpha
Helix 37
AE1
A
645 649Right-handed 310
Helix 38
AE2
A
650 663Right-handed alpha
Helix 39
AE3
A
674 679Right-handed alpha
Helix 40
AE4
A
683 690Right-handed alpha
Helix 41
AE5
A
706 728Right-handed alpha
Helix 42
AE6
A
732 744Right-handed alpha
Helix 43
AE7
A
745 749Right-handed 310
Helix 44
AE8
A
780 797Right-handed alpha
Helix 45
AE9
A
801 814Right-handed alpha
Helix 46
AF1
A
839 859Right-handed alpha
Helix 47
AF2
A
860 864Right-handed 310
Helix 48
AF3
A
872 876Right-handed 310
Helix 49
AF4
A
877 878Right-handed 310
Helix 50
AF5
A
879 884Right-handed alpha
Helix 51
AF6
A
887 896Right-handed alpha
Helix 52
AF7
A
897 909Right-handed alpha
Helix 53
AF8
A
911 939Right-handed alpha
Helix 54
AF9
A
957 972Right-handed alpha
Helix 55
AG1
A
977 981Right-handed 310
Helix 56
AG2
A
984 993Right-handed alpha
Helix 57
AG3
A
1004 1014Right-handed alpha
Helix 58
AG4
A
1035 1044Right-handed alpha
Helix 59
AG5
A
1046 1054Right-handed alpha
Helix 60
AG6
A
1058 1073Right-handed alpha
Helix 61
AG7
A
1083 1101Right-handed alpha
Helix 62
AG8
A
1102 1143Right-handed alpha
Helix 63
AG9
A
1149 1153Right-handed alpha
Helix 64
AH1
A
1167 1176Right-handed alpha
Helix 65
AH2
A
1201 1214Right-handed alpha
Helix 66
AH3
A
1226 1231Right-handed alpha
Helix 67
AH4
A
1232 1234Right-handed 310
Helix 68
AH5
A
1235 1248Right-handed alpha
Helix 69
AH6
A
1250 1255Right-handed alpha
Helix 70
AH7
A
1258 1270Right-handed alpha
Helix 71
AH8
A
1274 1279Right-handed alpha
Helix 72
AH9
A
1280 1292Right-handed alpha
Helix 73
AI1
A
1353 1366Right-handed alpha
Helix 74
AI2
A
1371 1376Right-handed alpha
Helix 75
AI3
C
47 61Right-handed alpha
Helix 76
AI4
C
79 94Right-handed alpha
Helix 77
AI5
C
99 104Right-handed alpha
Helix 78
AI6
C
105 110Right-handed alpha
Helix 79
AI7
C
111 128Right-handed alpha
Helix 80
AI8
C
135 139Right-handed 310
Helix 81
AI9
C
142 153Right-handed alpha
Helix 82
AJ1
C
154 164Right-handed alpha
Helix 83
AJ2
C
171 183Right-handed alpha
Helix 84
AJ3
C
184 188Right-handed 310
Helix 85
AJ4
C
189 204Right-handed alpha
Helix 86
AJ5
C
214 219Right-handed alpha
Helix 87
AJ6
C
219 228Right-handed alpha
Helix 88
AJ7
C
229 234Right-handed alpha
Helix 89
AJ8
C
235 242Right-handed alpha
Helix 90
AJ9
C
264 285Right-handed alpha
Helix 91
AK1
C
288 309Right-handed alpha
Helix 92
AK2
C
312 316Right-handed 310
Helix 93
AK3
C
323 333Right-handed alpha
Helix 94
AK4
C
353 386Right-handed alpha
Helix 95
AK5
C
394 414Right-handed alpha
Helix 96
AK6
C
421 424Right-handed 310
Helix 97
AK7
C
425 456Right-handed alpha
Helix 98
AK8
C
457 461Right-handed 310
Helix 99
AK9
C
474 478Right-handed 310
Helix 100
AL1
C
482 513Right-handed alpha
Helix 101
AL2
C
523 527Right-handed 310
Helix 102
AL3
C
545 549Right-handed 310
Helix 103
AL4
C
552 554Right-handed 310
Helix 104
AL5
C
555 561Right-handed alpha
Helix 105
AL6
C
562 565Right-handed 310
Helix 106
AL7
C
566 571Right-handed 310
Helix 107
AL8
C
574 579Right-handed alpha
Helix 108
AL9
C
584 600Right-handed alpha
Helix 109
AM1
C
617 630Right-handed alpha
Helix 110
AM2
C
631 643Right-handed alpha
Helix 111
AM3
C
650 663Right-handed alpha
Helix 112
AM4
C
674 679Right-handed alpha
Helix 113
AM5
C
683 690Right-handed alpha
Helix 114
AM6
C
705 728Right-handed alpha
Helix 115
AM7
C
732 744Right-handed alpha
Helix 116
AM8
C
745 749Right-handed 310
Helix 117
AM9
C
780 797Right-handed alpha
Helix 118
AN1
C
801 813Right-handed alpha
Helix 119
AN2
C
839 859Right-handed alpha
Helix 120
AN3
C
860 864Right-handed 310
Helix 121
AN4
C
872 876Right-handed 310
Helix 122
AN5
C
877 878Right-handed 310
Helix 123
AN6
C
879 884Right-handed alpha
Helix 124
AN7
C
887 896Right-handed alpha
Helix 125
AN8
C
897 909Right-handed alpha
Helix 126
AN9
C
911 939Right-handed alpha
Helix 127
AO1
C
957 972Right-handed alpha
Helix 128
AO2
C
977 981Right-handed 310
Helix 129
AO3
C
984 993Right-handed alpha
Helix 130
AO4
C
1004 1014Right-handed alpha
Helix 131
AO5
C
1035 1044Right-handed alpha
Helix 132
AO6
C
1046 1054Right-handed alpha
Helix 133
AO7
C
1058 1073Right-handed alpha
Helix 134
AO8
C
1083 1101Right-handed alpha
Helix 135
AO9
C
1102 1143Right-handed alpha
Helix 136
AP1
C
1149 1153Right-handed alpha
Helix 137
AP2
C
1167 1176Right-handed alpha
Helix 138
AP3
C
1201 1214Right-handed alpha
Helix 139
AP4
C
1226 1231Right-handed alpha
Helix 140
AP5
C
1232 1234Right-handed 310
Helix 141
AP6
C
1235 1248Right-handed alpha
Helix 142
AP7
C
1250 1255Right-handed alpha
Helix 143
AP8
C
1258 1270Right-handed alpha
Helix 144
AP9
C
1274 1279Right-handed alpha
Helix 145
AQ1
C
1280 1292Right-handed alpha
Helix 146
AQ2
C
1353 1366Right-handed alpha
Helix 147
AQ3
C
1371 1376Right-handed alpha
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There are 20 sheets in PDB entry 5W1I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 25first strand
Strand 2
A
30 35anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
255 257anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 469first strand
Strand 2
A
1163 1166parallel
Strand 3
A
1154 1157anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
951 952first strand
Strand 2
A
955 956anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1016 1018first strand
Strand 2
A
1021 1022anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1027 1028first strand
Strand 2
A
1031 1032anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1184 1186first strand
Strand 2
A
1193 1195anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1294 1296first strand
Strand 2
A
1333 1335anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1298 1307first strand
Strand 2
A
1318 1327anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1337 1341first strand
Strand 2
A
1346 1350anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 25first strand
Strand 2
C
30 35anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
247 249first strand
Strand 2
C
255 257anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
467 469first strand
Strand 2
C
1163 1166parallel
Strand 3
C
1154 1157anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
951 952first strand
Strand 2
C
955 956anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1016 1018first strand
Strand 2
C
1021 1022anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1027 1028first strand
Strand 2
C
1031 1032anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1184 1186first strand
Strand 2
C
1193 1195anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1294 1296first strand
Strand 2
C
1333 1335anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1298 1307first strand
Strand 2
C
1318 1327anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1337 1341first strand
Strand 2
C
1346 1350anti-parallel
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