Analysis of interatomic Contacts of Structural Units in PDB entry:
5W1J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5W1J entry

There are 2 chains in PDB entry 5W1J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	ALA 590
B	SER 4	ALA 590

There are 46 helices in PDB entry 5W1J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	17	Right-handed alpha
Helix 2	AA2	A	28	41	Right-handed alpha
Helix 3	AA3	A	54	56	Right-handed 310
Helix 4	AA4	A	58	71	Right-handed alpha
Helix 5	AA5	A	87	92	Right-handed alpha
Helix 6	AA6	A	97	103	Right-handed alpha
Helix 7	AA7	A	118	130	Right-handed alpha
Helix 8	AA8	A	153	160	Right-handed alpha
Helix 9	AA9	A	160	183	Right-handed alpha
Helix 10	AB1	A	193	219	Right-handed alpha
Helix 11	AB2	A	268	273	Right-handed alpha
Helix 12	AB3	A	275	280	Right-handed alpha
Helix 13	AB4	A	295	309	Right-handed alpha
Helix 14	AB5	A	325	339	Right-handed alpha
Helix 15	AB6	A	401	406	Right-handed alpha
Helix 16	AB7	A	431	434	Right-handed 310
Helix 17	AB8	A	440	458	Right-handed alpha
Helix 18	AB9	A	484	493	Right-handed alpha
Helix 19	AC1	A	506	510	Right-handed 310
Helix 20	AC2	A	528	530	Right-handed 310
Helix 21	AC3	A	542	556	Right-handed alpha
Helix 22	AC4	A	559	566	Right-handed alpha
Helix 23	AC5	A	573	579	Right-handed 310
Helix 24	AC6	B	5	17	Right-handed alpha
Helix 25	AC7	B	28	41	Right-handed alpha
Helix 26	AC8	B	54	56	Right-handed 310
Helix 27	AC9	B	58	71	Right-handed alpha
Helix 28	AD1	B	87	92	Right-handed alpha
Helix 29	AD2	B	94	104	Right-handed alpha
Helix 30	AD3	B	118	131	Right-handed alpha
Helix 31	AD4	B	153	160	Right-handed alpha
Helix 32	AD5	B	160	183	Right-handed alpha
Helix 33	AD6	B	193	219	Right-handed alpha
Helix 34	AD7	B	268	273	Right-handed alpha
Helix 35	AD8	B	275	280	Right-handed alpha
Helix 36	AD9	B	295	309	Right-handed alpha
Helix 37	AE1	B	325	339	Right-handed alpha
Helix 38	AE2	B	401	406	Right-handed alpha
Helix 39	AE3	B	431	434	Right-handed 310
Helix 40	AE4	B	440	457	Right-handed alpha
Helix 41	AE5	B	484	493	Right-handed alpha
Helix 42	AE6	B	506	510	Right-handed 310
Helix 43	AE7	B	528	530	Right-handed 310
Helix 44	AE8	B	542	556	Right-handed alpha
Helix 45	AE9	B	559	566	Right-handed alpha
Helix 46	AF1	B	573	579	Right-handed 310

There are 16 sheets in PDB entry 5W1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	52	first strand
Strand 2	A	20	24	parallel
Strand 3	A	77	80	anti-parallel
Strand 4	A	83	86	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	224	first strand
Strand 2	A	135	138	parallel
Strand 3	A	110	115	parallel
Strand 4	A	245	255	parallel
Strand 5	A	235	240	anti-parallel
Strand 6	A	226	232	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	224	first strand
Strand 2	A	135	138	parallel
Strand 3	A	110	115	parallel
Strand 4	A	245	255	parallel
Strand 5	A	427	429	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	393	395	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	312	315	parallel
Strand 3	A	289	292	parallel
Strand 4	A	386	389	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	354	first strand
Strand 2	A	368	373	anti-parallel
Strand 3	A	379	384	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	410	first strand
Strand 2	A	413	414	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	472	first strand
Strand 2	A	477	482	anti-parallel
Strand 3	A	532	540	anti-parallel
Strand 4	A	519	526	anti-parallel
Strand 5	A	497	504	anti-parallel
Strand 6	A	582	583	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	20	24	parallel
Strand 3	B	77	80	anti-parallel
Strand 4	B	83	86	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	224	first strand
Strand 2	B	135	138	parallel
Strand 3	B	110	115	parallel
Strand 4	B	245	255	parallel
Strand 5	B	235	239	anti-parallel
Strand 6	B	227	232	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	224	first strand
Strand 2	B	135	138	parallel
Strand 3	B	110	115	parallel
Strand 4	B	245	255	parallel
Strand 5	B	427	429	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	393	395	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	344	first strand
Strand 2	B	312	315	parallel
Strand 3	B	289	292	parallel
Strand 4	B	386	389	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	356	first strand
Strand 2	B	367	373	anti-parallel
Strand 3	B	379	384	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	413	414	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	472	first strand
Strand 2	B	478	482	anti-parallel
Strand 3	B	532	539	anti-parallel
Strand 4	B	519	526	anti-parallel
Strand 5	B	497	504	anti-parallel
Strand 6	B	582	583	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5W1J

Analysis of interatomic Contacts of Structural Units in PDB entry:
5W1J