Analysis of interatomic Contacts of Structural Units in PDB entry:
5W1M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5W1M entry

There are 12 chains in PDB entry 5W1M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	GLU 221
B	VAL 2	LYS 225
C	ASP 1	GLU 221
D	VAL 2	CYS 227
E	ASP 1	GLU 221
F	VAL 2	LYS 225
G	ASP 1	ARG 219
H	VAL 2	SER 226
Q	GLU 87	CYS 237
R	GLU 87	GLN 238
S	GLU 87	CYS 237
T	GLU 87	SER 235

There are 46 helices in PDB entry 5W1M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	87	91	Right-handed 310
Helix 2	AA2	A	129	135	Right-handed alpha
Helix 3	AA3	A	191	196	Right-handed alpha
Helix 4	AA4	B	28	32	Right-handed 310
Helix 5	AA5	B	87	91	Right-handed 310
Helix 6	AA6	B	167	169	Right-handed 310
Helix 7	AA7	B	198	202	Right-handed 310
Helix 8	AA8	C	87	91	Right-handed 310
Helix 9	AA9	C	129	135	Right-handed alpha
Helix 10	AB1	C	191	196	Right-handed alpha
Helix 11	AB2	D	28	32	Right-handed 310
Helix 12	AB3	D	87	91	Right-handed 310
Helix 13	AB4	D	167	169	Right-handed 310
Helix 14	AB5	D	198	202	Right-handed 310
Helix 15	AB6	D	212	215	Right-handed 310
Helix 16	AB7	E	87	91	Right-handed 310
Helix 17	AB8	E	129	135	Right-handed alpha
Helix 18	AB9	E	191	196	Right-handed alpha
Helix 19	AC1	F	28	32	Right-handed 310
Helix 20	AC2	F	87	91	Right-handed 310
Helix 21	AC3	F	167	169	Right-handed 310
Helix 22	AC4	F	198	202	Right-handed 310
Helix 23	AC5	G	87	91	Right-handed 310
Helix 24	AC6	G	129	135	Right-handed alpha
Helix 25	AC7	G	191	196	Right-handed alpha
Helix 26	AC8	H	28	32	Right-handed 310
Helix 27	AC9	H	87	91	Right-handed 310
Helix 28	AD1	H	167	169	Right-handed 310
Helix 29	AD2	H	198	202	Right-handed 310
Helix 30	AD3	Q	128	133	Right-handed 310
Helix 31	AD4	Q	141	153	Right-handed alpha
Helix 32	AD5	Q	186	200	Right-handed alpha
Helix 33	AD6	Q	222	230	Right-handed 310
Helix 34	AD7	R	128	135	Right-handed 310
Helix 35	AD8	R	138	153	Right-handed alpha
Helix 36	AD9	R	185	200	Right-handed alpha
Helix 37	AE1	R	226	230	Right-handed 310
Helix 38	AE2	S	128	135	Right-handed 310
Helix 39	AE3	S	141	152	Right-handed alpha
Helix 40	AE4	S	182	184	Right-handed 310
Helix 41	AE5	S	185	200	Right-handed alpha
Helix 42	AE6	S	222	230	Right-handed 310
Helix 43	AE7	T	128	132	Right-handed 310
Helix 44	AE8	T	141	152	Right-handed alpha
Helix 45	AE9	T	185	200	Right-handed alpha
Helix 46	AF1	T	222	230	Right-handed 310

There are 52 sheets in PDB entry 5W1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	70	75	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	110	114	parallel
Strand 3	A	92	98	anti-parallel
Strand 4	A	41	46	anti-parallel
Strand 5	A	53	57	anti-parallel
Strand 6	A	61	62	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	110	114	parallel
Strand 3	A	92	98	anti-parallel
Strand 4	A	105	106	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	38	39	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	126	first strand
Strand 2	A	137	147	anti-parallel
Strand 3	A	181	190	anti-parallel
Strand 4	A	167	171	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	153	158	anti-parallel
Strand 3	A	199	205	anti-parallel
Strand 4	A	213	218	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	118	122	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	118	122	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	111	114	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	135	first strand
Strand 2	B	146	156	anti-parallel
Strand 3	B	187	196	anti-parallel
Strand 4	B	174	176	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	135	first strand
Strand 2	B	146	156	anti-parallel
Strand 3	B	187	196	anti-parallel
Strand 4	B	180	181	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	205	211	anti-parallel
Strand 3	B	216	217	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	205	211	anti-parallel
Strand 3	B	220	222	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	70	75	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	110	113	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	41	46	anti-parallel
Strand 5	C	53	57	anti-parallel
Strand 6	C	61	62	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	110	113	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	105	106	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	38	39	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	137	147	anti-parallel
Strand 3	C	181	190	anti-parallel
Strand 4	C	167	171	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	153	158	anti-parallel
Strand 3	C	199	205	anti-parallel
Strand 4	C	213	218	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	118	122	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	118	122	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	111	114	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	135	first strand
Strand 2	D	146	156	anti-parallel
Strand 3	D	187	196	anti-parallel
Strand 4	D	174	176	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	135	first strand
Strand 2	D	146	156	anti-parallel
Strand 3	D	187	196	anti-parallel
Strand 4	D	180	181	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	165	first strand
Strand 2	D	205	211	anti-parallel
Strand 3	D	216	222	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	70	75	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	110	114	parallel
Strand 3	E	92	98	anti-parallel
Strand 4	E	41	46	anti-parallel
Strand 5	E	53	57	anti-parallel
Strand 6	E	61	62	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	110	114	parallel
Strand 3	E	92	98	anti-parallel
Strand 4	E	105	106	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	38	39	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	126	first strand
Strand 2	E	137	147	anti-parallel
Strand 3	E	181	190	anti-parallel
Strand 4	E	167	171	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	163	first strand
Strand 2	E	153	158	anti-parallel
Strand 3	E	199	205	anti-parallel
Strand 4	E	213	218	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	118	122	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	118	122	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	111	114	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	135	first strand
Strand 2	F	146	156	anti-parallel
Strand 3	F	187	196	anti-parallel
Strand 4	F	174	176	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	135	first strand
Strand 2	F	146	156	anti-parallel
Strand 3	F	187	196	anti-parallel
Strand 4	F	180	181	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	205	210	anti-parallel
Strand 3	F	218	222	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	70	75	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	110	114	parallel
Strand 3	G	92	98	anti-parallel
Strand 4	G	41	46	anti-parallel
Strand 5	G	53	57	anti-parallel
Strand 6	G	61	62	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	110	114	parallel
Strand 3	G	92	98	anti-parallel
Strand 4	G	105	106	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	31	first strand
Strand 2	G	38	39	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	126	first strand
Strand 2	G	137	147	anti-parallel
Strand 3	G	181	190	anti-parallel
Strand 4	G	167	171	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	161	163	first strand
Strand 2	G	153	158	anti-parallel
Strand 3	G	199	205	anti-parallel
Strand 4	G	213	218	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	111	114	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	135	first strand
Strand 2	H	146	156	anti-parallel
Strand 3	H	187	196	anti-parallel
Strand 4	H	174	176	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	165	first strand
Strand 2	H	205	211	anti-parallel
Strand 3	H	216	222	anti-parallel

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There are 7 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	90	93	first strand
Strand 2	Q	99	103	anti-parallel
Strand 3	Q	106	113	anti-parallel
Strand 4	Q	214	219	anti-parallel
Strand 5	Q	175	178	anti-parallel
Strand 6	Q	162	164	anti-parallel
Strand 7	Q	124	126	anti-parallel

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There are 7 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	90	95	first strand
Strand 2	R	98	103	anti-parallel
Strand 3	R	106	113	anti-parallel
Strand 4	R	214	219	anti-parallel
Strand 5	R	174	178	anti-parallel
Strand 6	R	162	164	anti-parallel
Strand 7	R	124	126	anti-parallel

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There are 7 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	90	95	first strand
Strand 2	S	98	103	anti-parallel
Strand 3	S	106	111	anti-parallel
Strand 4	S	216	219	anti-parallel
Strand 5	S	174	176	anti-parallel
Strand 6	S	162	165	anti-parallel
Strand 7	S	124	126	anti-parallel

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There are 7 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	90	93	first strand
Strand 2	T	99	103	anti-parallel
Strand 3	T	106	110	anti-parallel
Strand 4	T	214	219	anti-parallel
Strand 5	T	174	178	anti-parallel
Strand 6	T	162	165	anti-parallel
Strand 7	T	124	126	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5W1M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5W1M