Analysis of interatomic Contacts of Structural Units in PDB entry:
5W1U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W1U entry

There are 2 chains in PDB entry 5W1U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5PHE 540
B
 GLU 4PHE 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5W1U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
125 129Right-handed 310
Helix 2
AA2
A
141 146Right-handed alpha
Helix 3
AA3
A
150 154Right-handed 310
Helix 4
AA4
A
158 175Right-handed alpha
Helix 5
AA5
A
176 178Right-handed 310
Helix 6
AA6
A
191 203Right-handed alpha
Helix 7
AA7
A
204 207Right-handed 310
Helix 8
AA8
A
222 226Right-handed 310
Helix 9
AA9
A
231 242Right-handed alpha
Helix 10
AB1
A
246 256Right-handed alpha
Helix 11
AB2
A
259 267Right-handed alpha
Helix 12
AB3
A
274 278Right-handed 310
Helix 13
AB4
A
301 306Right-handed alpha
Helix 14
AB5
A
307 314Right-handed 310
Helix 15
AB6
A
323 327Right-handed 310
Helix 16
AB7
A
328 334Right-handed alpha
Helix 17
AB8
A
356 372Right-handed alpha
Helix 18
AB9
A
382 394Right-handed alpha
Helix 19
AC1
A
394 409Right-handed alpha
Helix 20
AC2
A
426 432Right-handed alpha
Helix 21
AC3
A
443 449Right-handed 310
Helix 22
AC4
A
462 482Right-handed alpha
Helix 23
AC5
A
486 491Right-handed alpha
Helix 24
AC6
A
523 534Right-handed alpha
Helix 25
AC7
B
125 129Right-handed 310
Helix 26
AC8
B
141 146Right-handed alpha
Helix 27
AC9
B
150 154Right-handed 310
Helix 28
AD1
B
158 175Right-handed alpha
Helix 29
AD2
B
176 178Right-handed 310
Helix 30
AD3
B
191 203Right-handed alpha
Helix 31
AD4
B
204 207Right-handed 310
Helix 32
AD5
B
222 226Right-handed 310
Helix 33
AD6
B
231 241Right-handed alpha
Helix 34
AD7
B
246 258Right-handed alpha
Helix 35
AD8
B
259 268Right-handed alpha
Helix 36
AD9
B
301 308Right-handed alpha
Helix 37
AE1
B
309 314Right-handed 310
Helix 38
AE2
B
323 327Right-handed 310
Helix 39
AE3
B
328 333Right-handed alpha
Helix 40
AE4
B
337 341Right-handed 310
Helix 41
AE5
B
345 349Right-handed 310
Helix 42
AE6
B
356 372Right-handed alpha
Helix 43
AE7
B
382 394Right-handed alpha
Helix 44
AE8
B
394 409Right-handed alpha
Helix 45
AE9
B
426 433Right-handed alpha
Helix 46
AF1
B
444 449Right-handed 310
Helix 47
AF2
B
462 482Right-handed alpha
Helix 48
AF3
B
486 492Right-handed alpha
Helix 49
AF4
B
523 534Right-handed alpha
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There are 6 sheets in PDB entry 5W1U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
13 16anti-parallel
Strand 3
A
59 60parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
27 35anti-parallel
Strand 3
A
86 91anti-parallel
Strand 4
A
132 136anti-parallel
Strand 5
A
100 106parallel
Strand 6
A
180 190parallel
Strand 7
A
212 216parallel
Strand 8
A
315 321parallel
Strand 9
A
413 418parallel
Strand 10
A
507 511parallel
Strand 11
A
518 520anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
78 79anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 10first strand
Strand 2
B
13 16anti-parallel
Strand 3
B
59 60parallel
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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
27 35anti-parallel
Strand 3
B
86 91anti-parallel
Strand 4
B
132 136anti-parallel
Strand 5
B
100 106parallel
Strand 6
B
180 190parallel
Strand 7
B
212 216parallel
Strand 8
B
315 321parallel
Strand 9
B
413 418parallel
Strand 10
B
507 512parallel
Strand 11
B
515 520anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
78 79anti-parallel
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