Analysis of interatomic Contacts of Structural Units in PDB entry:
5W2B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W2B entry

There are 3 chains in PDB entry 5W2B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 4LYS 229
L
 GLN 4GLY 213
A
 LYS 643GLN 739
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5W2B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
31 34Right-handed 310
Helix 2
AA2
H
65 68Right-handed 310
Helix 3
AA3
H
90 94Right-handed 310
Helix 4
AA4
H
142 146Right-handed 310
Helix 5
AA5
H
216 219Right-handed 310
Helix 6
AA6
L
80 84Right-handed 310
Helix 7
AA7
L
122 127Right-handed alpha
Helix 8
AA8
L
184 189Right-handed alpha
Helix 9
AA9
A
644 659Right-handed alpha
Helix 10
AB1
A
660 673Right-handed alpha
Helix 11
AB2
A
689 693Right-handed 310
Helix 12
AB3
A
703 710Right-handed 310
Helix 13
AB4
A
723 725Right-handed 310
Helix 14
AB5
A
726 738Right-handed alpha
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There are 13 sheets in PDB entry 5W2B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 10first strand
Strand 2
H
21 28anti-parallel
Strand 3
H
81 86anti-parallel
Strand 4
H
71 76anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
14 15first strand
Strand 2
H
122 126parallel
Strand 3
H
95 102anti-parallel
Strand 4
H
36 42anti-parallel
Strand 5
H
49 55anti-parallel
Strand 6
H
60 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
14 15first strand
Strand 2
H
122 126parallel
Strand 3
H
95 102anti-parallel
Strand 4
H
117 118anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
135 139first strand
Strand 2
H
150 160anti-parallel
Strand 3
H
191 200anti-parallel
Strand 4
H
178 180anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
135 139first strand
Strand 2
H
150 160anti-parallel
Strand 3
H
191 200anti-parallel
Strand 4
H
184 185anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
166 169first strand
Strand 2
H
210 215anti-parallel
Strand 3
H
220 225anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
6 8first strand
Strand 2
L
20 25anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 67anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 14first strand
Strand 2
L
103 107parallel
Strand 3
L
86 93anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 50anti-parallel
Strand 6
L
54 55anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 14first strand
Strand 2
L
103 107parallel
Strand 3
L
86 93anti-parallel
Strand 4
L
96 99anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 119first strand
Strand 2
L
130 140anti-parallel
Strand 3
L
174 183anti-parallel
Strand 4
L
160 164anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
154 155first strand
Strand 2
L
146 151anti-parallel
Strand 3
L
192 198anti-parallel
Strand 4
L
206 211anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
676 679first strand
Strand 2
A
685 688anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 715first strand
Strand 2
A
718 721anti-parallel
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