Analysis of interatomic Contacts of Structural Units in PDB entry:
5W2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W2J entry

There are 3 chains in PDB entry 5W2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 143GLU 550
B
 LEU 141GLY 551
F
 ALA 3ALA 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5W2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 154Right-handed alpha
Helix 2
AA2
A
161 170Right-handed alpha
Helix 3
AA3
A
177 179Right-handed 310
Helix 4
AA4
A
180 192Right-handed alpha
Helix 5
AA5
A
201 210Right-handed alpha
Helix 6
AA6
A
212 221Right-handed alpha
Helix 7
AA7
A
228 245Right-handed alpha
Helix 8
AA8
A
255 260Right-handed alpha
Helix 9
AA9
A
292 306Right-handed alpha
Helix 10
AB1
A
306 314Right-handed alpha
Helix 11
AB2
A
339 348Right-handed alpha
Helix 12
AB3
A
355 371Right-handed alpha
Helix 13
AB4
A
379 389Right-handed alpha
Helix 14
AB5
A
390 403Right-handed alpha
Helix 15
AB6
A
411 424Right-handed alpha
Helix 16
AB7
A
428 441Right-handed alpha
Helix 17
AB8
A
454 469Right-handed alpha
Helix 18
AB9
A
470 472Right-handed 310
Helix 19
AC1
A
473 481Right-handed alpha
Helix 20
AC2
A
516 530Right-handed alpha
Helix 21
AC3
B
143 154Right-handed alpha
Helix 22
AC4
B
161 171Right-handed alpha
Helix 23
AC5
B
177 179Right-handed 310
Helix 24
AC6
B
180 193Right-handed alpha
Helix 25
AC7
B
202 210Right-handed alpha
Helix 26
AC8
B
212 221Right-handed alpha
Helix 27
AC9
B
228 244Right-handed alpha
Helix 28
AD1
B
255 260Right-handed alpha
Helix 29
AD2
B
290 292Right-handed 310
Helix 30
AD3
B
293 306Right-handed alpha
Helix 31
AD4
B
306 311Right-handed alpha
Helix 32
AD5
B
339 348Right-handed alpha
Helix 33
AD6
B
355 371Right-handed alpha
Helix 34
AD7
B
379 389Right-handed alpha
Helix 35
AD8
B
390 403Right-handed alpha
Helix 36
AD9
B
411 424Right-handed alpha
Helix 37
AE1
B
428 441Right-handed alpha
Helix 38
AE2
B
454 469Right-handed alpha
Helix 39
AE3
B
470 472Right-handed 310
Helix 40
AE4
B
473 481Right-handed alpha
Helix 41
AE5
B
516 530Right-handed alpha
Helix 42
AE6
F
4 16Right-handed alpha
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There are 7 sheets in PDB entry 5W2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
199 200anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
509 510anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 281first strand
Strand 2
A
267 272anti-parallel
Strand 3
A
501 506anti-parallel
Strand 4
A
492 497anti-parallel
Strand 5
A
485 487anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 288first strand
Strand 2
A
425 427anti-parallel
Strand 3
A
377 378anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 160first strand
Strand 2
B
199 201anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 281first strand
Strand 2
B
267 272anti-parallel
Strand 3
B
501 506anti-parallel
Strand 4
B
492 497anti-parallel
Strand 5
B
485 487anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 288first strand
Strand 2
B
425 427anti-parallel
Strand 3
B
377 378anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il