Analysis of interatomic Contacts of Structural Units in PDB entry:
5W2L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W2L entry

There are 2 chains in PDB entry 5W2L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 725ALA 874
B
 GLY 724ALA 874
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5W2L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
803 811Right-handed 310
Helix 2
AA2
A
842 846Right-handed 310
Helix 3
AA3
A
864 874Right-handed alpha
Helix 4
AA4
B
803 811Right-handed 310
Helix 5
AA5
B
842 846Right-handed 310
Helix 6
AA6
B
864 874Right-handed alpha
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There are 4 sheets in PDB entry 5W2L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 744first strand
Strand 2
A
760 769anti-parallel
Strand 3
A
728 738anti-parallel
Strand 4
A
795 801first strand
Strand 5
A
851 853parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
780 781first strand
Strand 2
A
774 777anti-parallel
Strand 3
A
728 738anti-parallel
Strand 4
A
760 769anti-parallel
Strand 5
A
816 822first strand
Strand 6
A
859 862anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
742 744first strand
Strand 2
B
760 769anti-parallel
Strand 3
B
728 738anti-parallel
Strand 4
B
795 801first strand
Strand 5
B
851 853parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
780 781first strand
Strand 2
B
774 777anti-parallel
Strand 3
B
728 738anti-parallel
Strand 4
B
760 769anti-parallel
Strand 5
B
816 822first strand
Strand 6
B
859 862anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il