Analysis of interatomic Contacts of Structural Units in PDB entry:
5W2M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5W2M entry

There are 10 chains in PDB entry 5W2M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 190	GLU 373
B	ASN 190	GLU 373
C	ASN 190	GLU 373
D	ASN 190	GLU 373
E	T 901	T 910
J	ASN 190	GLU 373
K	ASN 190	GLU 373
L	ASN 190	GLU 373
M	ASN 190	GLU 373
N	T 901	T 910

There are 48 helices in PDB entry 5W2M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	196	204	Right-handed alpha
Helix 2	AA2	A	250	261	Right-handed alpha
Helix 3	AA3	A	280	294	Right-handed alpha
Helix 4	AA4	A	311	321	Right-handed alpha
Helix 5	AA5	A	332	343	Right-handed alpha
Helix 6	AA6	A	356	372	Right-handed alpha
Helix 7	AA7	B	196	204	Right-handed alpha
Helix 8	AA8	B	250	261	Right-handed alpha
Helix 9	AA9	B	280	294	Right-handed alpha
Helix 10	AB1	B	311	321	Right-handed alpha
Helix 11	AB2	B	332	343	Right-handed alpha
Helix 12	AB3	B	356	372	Right-handed alpha
Helix 13	AB4	C	196	205	Right-handed alpha
Helix 14	AB5	C	250	261	Right-handed alpha
Helix 15	AB6	C	282	289	Right-handed alpha
Helix 16	AB7	C	311	322	Right-handed alpha
Helix 17	AB8	C	332	344	Right-handed alpha
Helix 18	AB9	C	356	372	Right-handed alpha
Helix 19	AC1	D	196	205	Right-handed alpha
Helix 20	AC2	D	250	261	Right-handed alpha
Helix 21	AC3	D	282	289	Right-handed alpha
Helix 22	AC4	D	311	322	Right-handed alpha
Helix 23	AC5	D	332	344	Right-handed alpha
Helix 24	AC6	D	356	372	Right-handed alpha
Helix 25	AC7	J	196	204	Right-handed alpha
Helix 26	AC8	J	250	261	Right-handed alpha
Helix 27	AC9	J	280	294	Right-handed alpha
Helix 28	AD1	J	311	321	Right-handed alpha
Helix 29	AD2	J	332	343	Right-handed alpha
Helix 30	AD3	J	356	372	Right-handed alpha
Helix 31	AD4	K	196	204	Right-handed alpha
Helix 32	AD5	K	250	261	Right-handed alpha
Helix 33	AD6	K	280	294	Right-handed alpha
Helix 34	AD7	K	311	321	Right-handed alpha
Helix 35	AD8	K	332	343	Right-handed alpha
Helix 36	AD9	K	356	372	Right-handed alpha
Helix 37	AE1	L	196	205	Right-handed alpha
Helix 38	AE2	L	250	261	Right-handed alpha
Helix 39	AE3	L	282	289	Right-handed alpha
Helix 40	AE4	L	311	324	Right-handed alpha
Helix 41	AE5	L	332	344	Right-handed alpha
Helix 42	AE6	L	356	372	Right-handed alpha
Helix 43	AE7	M	196	205	Right-handed alpha
Helix 44	AE8	M	250	261	Right-handed alpha
Helix 45	AE9	M	282	289	Right-handed alpha
Helix 46	AF1	M	311	322	Right-handed alpha
Helix 47	AF2	M	332	344	Right-handed alpha
Helix 48	AF3	M	356	372	Right-handed alpha

There are 16 sheets in PDB entry 5W2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	217	225	anti-parallel
Strand 3	A	237	239	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	217	225	anti-parallel
Strand 3	A	268	273	anti-parallel
Strand 4	A	297	303	parallel
Strand 5	A	328	330	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	217	225	anti-parallel
Strand 3	B	237	239	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	217	225	anti-parallel
Strand 3	B	268	273	anti-parallel
Strand 4	B	297	303	parallel
Strand 5	B	328	330	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	268	275	anti-parallel
Strand 3	C	217	221	anti-parallel
Strand 4	C	235	239	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	268	275	anti-parallel
Strand 3	C	297	303	parallel
Strand 4	C	326	330	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	225	first strand
Strand 2	D	268	275	anti-parallel
Strand 3	D	217	221	anti-parallel
Strand 4	D	235	239	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	225	first strand
Strand 2	D	268	275	anti-parallel
Strand 3	D	297	303	parallel
Strand 4	D	326	330	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	232	234	first strand
Strand 2	J	217	225	anti-parallel
Strand 3	J	237	239	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	232	234	first strand
Strand 2	J	217	225	anti-parallel
Strand 3	J	268	273	anti-parallel
Strand 4	J	297	303	parallel
Strand 5	J	328	330	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	232	234	first strand
Strand 2	K	217	225	anti-parallel
Strand 3	K	237	239	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	232	234	first strand
Strand 2	K	217	225	anti-parallel
Strand 3	K	268	273	anti-parallel
Strand 4	K	297	303	parallel
Strand 5	K	328	330	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	224	225	first strand
Strand 2	L	268	275	anti-parallel
Strand 3	L	217	221	anti-parallel
Strand 4	L	235	239	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	224	225	first strand
Strand 2	L	268	275	anti-parallel
Strand 3	L	297	303	parallel
Strand 4	L	326	330	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	224	225	first strand
Strand 2	M	268	275	anti-parallel
Strand 3	M	217	221	anti-parallel
Strand 4	M	235	239	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	224	225	first strand
Strand 2	M	268	275	anti-parallel
Strand 3	M	297	303	parallel
Strand 4	M	326	330	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5W2M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5W2M