Analysis of interatomic Contacts of Structural Units in PDB entry:
5W33


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W33 entry

There is 1 chain in PDB entry 5W33 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 111TRP 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5W33. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
113 132Right-handed alpha
Helix 2
AA2
A
133 136Right-handed 310
Helix 3
AA3
A
137 147Right-handed alpha
Helix 4
AA4
A
150 157Right-handed alpha
Helix 5
AA5
A
167 175Right-handed alpha
Helix 6
AA6
A
179 186Right-handed alpha
Helix 7
AA7
A
250 262Right-handed alpha
Helix 8
AA8
A
269 280Right-handed alpha
Helix 9
AA9
A
294 305Right-handed alpha
Helix 10
AB1
A
322 329Right-handed alpha
Helix 11
AB2
A
330 332Right-handed 310
Helix 12
AB3
A
352 361Right-handed alpha
Helix 13
AB4
A
361 371Right-handed alpha
Helix 14
AB5
A
375 386Right-handed alpha
Helix 15
AB6
A
395 408Right-handed alpha
Helix 16
AB7
A
411 425Right-handed alpha
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There are 3 sheets in PDB entry 5W33. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
203 209anti-parallel
Strand 3
A
215 222anti-parallel
Strand 4
A
233 235anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
195 198anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 286first strand
Strand 2
A
263 267parallel
Strand 3
A
313 318parallel
Strand 4
A
342 346parallel
Strand 5
A
373 374anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il