Analysis of interatomic Contacts of Structural Units in PDB entry:
5W34


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W34 entry

There are 4 chains in PDB entry 5W34 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 111ALA 429
B
 MET 111VAL 431
C
 A 15 G 21
D
 C 3 G 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5W34. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
113 132Right-handed alpha
Helix 2
AA2
A
137 147Right-handed alpha
Helix 3
AA3
A
150 158Right-handed alpha
Helix 4
AA4
A
167 177Right-handed alpha
Helix 5
AA5
A
179 186Right-handed alpha
Helix 6
AA6
A
250 262Right-handed alpha
Helix 7
AA7
A
269 279Right-handed alpha
Helix 8
AA8
A
293 306Right-handed alpha
Helix 9
AA9
A
322 327Right-handed alpha
Helix 10
AB1
A
328 332Right-handed 310
Helix 11
AB2
A
336 340Right-handed 310
Helix 12
AB3
A
352 360Right-handed alpha
Helix 13
AB4
A
361 371Right-handed alpha
Helix 14
AB5
A
375 386Right-handed alpha
Helix 15
AB6
A
391 402Right-handed alpha
Helix 16
AB7
A
402 409Right-handed alpha
Helix 17
AB8
A
411 426Right-handed alpha
Helix 18
AB9
B
113 132Right-handed alpha
Helix 19
AC1
B
137 147Right-handed alpha
Helix 20
AC2
B
150 157Right-handed alpha
Helix 21
AC3
B
169 177Right-handed alpha
Helix 22
AC4
B
179 186Right-handed alpha
Helix 23
AC5
B
250 262Right-handed alpha
Helix 24
AC6
B
269 279Right-handed alpha
Helix 25
AC7
B
293 304Right-handed alpha
Helix 26
AC8
B
321 329Right-handed alpha
Helix 27
AC9
B
330 332Right-handed 310
Helix 28
AD1
B
352 371Right-handed alpha
Helix 29
AD2
B
375 386Right-handed alpha
Helix 30
AD3
B
392 408Right-handed alpha
Helix 31
AD4
B
411 427Right-handed alpha
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There are 7 sheets in PDB entry 5W34. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
203 209anti-parallel
Strand 3
A
215 222anti-parallel
Strand 4
A
233 235anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
195 198anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 286first strand
Strand 2
A
263 267parallel
Strand 3
A
313 320parallel
Strand 4
A
342 349parallel
Strand 5
A
373 374anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
203 209anti-parallel
Strand 3
B
215 222anti-parallel
Strand 4
B
233 235anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 190first strand
Strand 2
B
197 198anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 286first strand
Strand 2
B
263 267parallel
Strand 3
B
313 318parallel
Strand 4
B
342 346parallel
Strand 5
B
373 374anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 306first strand
Strand 2
B
309 310anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il