Analysis of interatomic Contacts of Structural Units in PDB entry:
5W3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W3D entry

There are 2 chains in PDB entry 5W3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 292LYS 671
B
 MET 292SER 669
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5W3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
292 347Right-handed alpha
Helix 2
AA2
A
407 414Right-handed alpha
Helix 3
AA3
A
415 424Right-handed alpha
Helix 4
AA4
A
439 445Right-handed alpha
Helix 5
AA5
A
452 469Right-handed alpha
Helix 6
AA6
A
524 539Right-handed alpha
Helix 7
AA7
A
549 553Right-handed 310
Helix 8
AA8
A
601 615Right-handed alpha
Helix 9
AA9
A
621 624Right-handed 310
Helix 10
AB1
A
625 631Right-handed alpha
Helix 11
AB2
A
632 635Right-handed 310
Helix 12
AB3
A
650 652Right-handed 310
Helix 13
AB4
A
653 670Right-handed alpha
Helix 14
AB5
B
294 346Right-handed alpha
Helix 15
AB6
B
407 414Right-handed alpha
Helix 16
AB7
B
415 425Right-handed alpha
Helix 17
AB8
B
439 445Right-handed alpha
Helix 18
AB9
B
452 469Right-handed alpha
Helix 19
AC1
B
524 539Right-handed alpha
Helix 20
AC2
B
601 615Right-handed alpha
Helix 21
AC3
B
626 631Right-handed alpha
Helix 22
AC4
B
650 652Right-handed 310
Helix 23
AC5
B
653 668Right-handed alpha
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There are 10 sheets in PDB entry 5W3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
349 355parallel
Strand 3
A
640 647parallel
Strand 4
A
428 433parallel
Strand 5
A
570 580parallel
Strand 6
A
554 565anti-parallel
Strand 7
A
473 485anti-parallel
Strand 8
A
488 491anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
349 355parallel
Strand 3
A
640 647parallel
Strand 4
A
428 433parallel
Strand 5
A
570 580parallel
Strand 6
A
554 565anti-parallel
Strand 7
A
473 485anti-parallel
Strand 8
A
520 521anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
377 381anti-parallel
Strand 3
A
394 397anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 447first strand
Strand 2
A
450 451anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 504first strand
Strand 2
A
512 514anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 402first strand
Strand 2
B
349 355parallel
Strand 3
B
641 647parallel
Strand 4
B
427 434parallel
Strand 5
B
575 580parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 372first strand
Strand 2
B
377 381anti-parallel
Strand 3
B
395 397anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 447first strand
Strand 2
B
450 451anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
520 522first strand
Strand 2
B
474 479anti-parallel
Strand 3
B
561 564anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 491first strand
Strand 2
B
482 484anti-parallel
Strand 3
B
554 556anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il