Analysis of interatomic Contacts of Structural Units in PDB entry:
5W3F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W3F entry

There are 2 chains in PDB entry 5W3F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 440
B
 MET 1GLU 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5W3F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 28Right-handed alpha
Helix 2
AA2
A
72 81Right-handed alpha
Helix 3
AA3
A
84 88Right-handed 310
Helix 4
AA4
A
89 91Right-handed 310
Helix 5
AA5
A
103 108Right-handed alpha
Helix 6
AA6
A
111 114Right-handed 310
Helix 7
AA7
A
115 130Right-handed alpha
Helix 8
AA8
A
144 162Right-handed alpha
Helix 9
AA9
A
183 199Right-handed alpha
Helix 10
AB1
A
207 217Right-handed alpha
Helix 11
AB2
A
224 239Right-handed alpha
Helix 12
AB3
A
240 244Right-handed 310
Helix 13
AB4
A
254 261Right-handed alpha
Helix 14
AB5
A
288 298Right-handed alpha
Helix 15
AB6
A
299 302Right-handed 310
Helix 16
AB7
A
325 338Right-handed alpha
Helix 17
AB8
A
382 384Right-handed 310
Helix 18
AB9
A
385 403Right-handed alpha
Helix 19
AC1
A
406 411Right-handed alpha
Helix 20
AC2
A
415 439Right-handed alpha
Helix 21
AC3
B
10 28Right-handed alpha
Helix 22
AC4
B
55 57Right-handed 310
Helix 23
AC5
B
69 78Right-handed alpha
Helix 24
AC6
B
86 90Right-handed 310
Helix 25
AC7
B
107 111Right-handed 310
Helix 26
AC8
B
112 127Right-handed alpha
Helix 27
AC9
B
141 146Right-handed alpha
Helix 28
AD1
B
146 159Right-handed alpha
Helix 29
AD2
B
180 193Right-handed alpha
Helix 30
AD3
B
203 214Right-handed alpha
Helix 31
AD4
B
221 234Right-handed alpha
Helix 32
AD5
B
237 242Right-handed alpha
Helix 33
AD6
B
249 257Right-handed alpha
Helix 34
AD7
B
285 294Right-handed alpha
Helix 35
AD8
B
295 299Right-handed 310
Helix 36
AD9
B
323 337Right-handed alpha
Helix 37
AE1
B
338 341Right-handed 310
Helix 38
AE2
B
373 389Right-handed alpha
Helix 39
AE3
B
390 392Right-handed 310
Helix 40
AE4
B
395 400Right-handed alpha
Helix 41
AE5
B
404 422Right-handed alpha
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There are 6 sheets in PDB entry 5W3F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
66 69parallel
Strand 3
A
4 9parallel
Strand 4
A
135 141parallel
Strand 5
A
166 173parallel
Strand 6
A
201 206parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
63 64anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
352 357anti-parallel
Strand 3
A
316 322parallel
Strand 4
A
374 380anti-parallel
Strand 5
A
270 274anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
65 67parallel
Strand 3
B
5 9parallel
Strand 4
B
133 138parallel
Strand 5
B
165 169parallel
Strand 6
B
198 201parallel
Strand 7
B
265 267parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
59 61anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 315first strand
Strand 2
B
367 368anti-parallel
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