Analysis of interatomic Contacts of Structural Units in PDB entry:
5W3H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W3H entry

There are 2 chains in PDB entry 5W3H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 440
B
 MET 1GLU 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5W3H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 29Right-handed alpha
Helix 2
AA2
A
46 51Right-handed alpha
Helix 3
AA3
A
58 60Right-handed 310
Helix 4
AA4
A
72 81Right-handed alpha
Helix 5
AA5
A
82 87Right-handed 310
Helix 6
AA6
A
89 91Right-handed 310
Helix 7
AA7
A
103 110Right-handed alpha
Helix 8
AA8
A
110 130Right-handed alpha
Helix 9
AA9
A
145 162Right-handed alpha
Helix 10
AB1
A
183 199Right-handed alpha
Helix 11
AB2
A
207 217Right-handed alpha
Helix 12
AB3
A
224 245Right-handed alpha
Helix 13
AB4
A
252 261Right-handed alpha
Helix 14
AB5
A
281 285Right-handed 310
Helix 15
AB6
A
288 298Right-handed alpha
Helix 16
AB7
A
299 302Right-handed 310
Helix 17
AB8
A
307 311Right-handed 310
Helix 18
AB9
A
325 340Right-handed alpha
Helix 19
AC1
A
385 402Right-handed alpha
Helix 20
AC2
A
405 411Right-handed alpha
Helix 21
AC3
A
415 440Right-handed alpha
Helix 22
AC4
B
10 29Right-handed alpha
Helix 23
AC5
B
40 46Right-handed alpha
Helix 24
AC6
B
47 49Right-handed 310
Helix 25
AC7
B
55 57Right-handed 310
Helix 26
AC8
B
69 79Right-handed alpha
Helix 27
AC9
B
86 88Right-handed 310
Helix 28
AD1
B
100 106Right-handed alpha
Helix 29
AD2
B
108 112Right-handed 310
Helix 30
AD3
B
113 126Right-handed alpha
Helix 31
AD4
B
142 159Right-handed alpha
Helix 32
AD5
B
180 196Right-handed alpha
Helix 33
AD6
B
204 214Right-handed alpha
Helix 34
AD7
B
221 242Right-handed alpha
Helix 35
AD8
B
249 258Right-handed alpha
Helix 36
AD9
B
277 282Right-handed 310
Helix 37
AE1
B
285 295Right-handed alpha
Helix 38
AE2
B
296 299Right-handed 310
Helix 39
AE3
B
322 337Right-handed alpha
Helix 40
AE4
B
338 341Right-handed 310
Helix 41
AE5
B
374 392Right-handed alpha
Helix 42
AE6
B
394 400Right-handed alpha
Helix 43
AE7
B
404 427Right-handed alpha
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There are 5 sheets in PDB entry 5W3H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
66 70parallel
Strand 3
A
3 9parallel
Strand 4
A
133 141parallel
Strand 5
A
166 173parallel
Strand 6
A
201 206parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
62 63anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
352 357anti-parallel
Strand 3
A
313 322parallel
Strand 4
A
374 382anti-parallel
Strand 5
A
270 273anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
63 67parallel
Strand 3
B
3 9parallel
Strand 4
B
130 138parallel
Strand 5
B
163 170parallel
Strand 6
B
198 203parallel
Strand 7
B
265 271parallel
Strand 8
B
363 371anti-parallel
Strand 9
B
310 319anti-parallel
Strand 10
B
349 354parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
59 61anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il