Analysis of interatomic Contacts of Structural Units in PDB entry:
5W3J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W3J entry

There are 2 chains in PDB entry 5W3J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 440
B
 MET 1GLU 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5W3J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 28Right-handed alpha
Helix 2
AA2
A
46 51Right-handed alpha
Helix 3
AA3
A
72 81Right-handed alpha
Helix 4
AA4
A
89 93Right-handed 310
Helix 5
AA5
A
110 115Right-handed alpha
Helix 6
AA6
A
115 129Right-handed alpha
Helix 7
AA7
A
148 162Right-handed alpha
Helix 8
AA8
A
185 196Right-handed alpha
Helix 9
AA9
A
206 216Right-handed alpha
Helix 10
AB1
A
224 240Right-handed alpha
Helix 11
AB2
A
240 245Right-handed alpha
Helix 12
AB3
A
252 256Right-handed 310
Helix 13
AB4
A
288 295Right-handed alpha
Helix 14
AB5
A
298 302Right-handed 310
Helix 15
AB6
A
325 338Right-handed alpha
Helix 16
AB7
A
384 402Right-handed alpha
Helix 17
AB8
A
406 411Right-handed alpha
Helix 18
AB9
A
417 439Right-handed alpha
Helix 19
AC1
B
10 28Right-handed alpha
Helix 20
AC2
B
43 47Right-handed 310
Helix 21
AC3
B
69 78Right-handed alpha
Helix 22
AC4
B
115 127Right-handed alpha
Helix 23
AC5
B
142 159Right-handed alpha
Helix 24
AC6
B
180 191Right-handed alpha
Helix 25
AC7
B
204 212Right-handed alpha
Helix 26
AC8
B
221 237Right-handed alpha
Helix 27
AC9
B
251 256Right-handed alpha
Helix 28
AD1
B
285 294Right-handed alpha
Helix 29
AD2
B
322 337Right-handed alpha
Helix 30
AD3
B
371 373Right-handed 310
Helix 31
AD4
B
374 391Right-handed alpha
Helix 32
AD5
B
395 400Right-handed alpha
Helix 33
AD6
B
404 427Right-handed alpha
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There are 8 sheets in PDB entry 5W3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
3 9parallel
Strand 3
A
133 139parallel
Strand 4
A
166 169parallel
Strand 5
A
201 202parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
62 64anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
374 378anti-parallel
Strand 3
A
313 322anti-parallel
Strand 4
A
352 353parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
374 378anti-parallel
Strand 3
A
313 322anti-parallel
Strand 4
A
381 382anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
3 9parallel
Strand 3
B
130 136parallel
Strand 4
B
163 167parallel
Strand 5
B
198 203parallel
Strand 6
B
169 170parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
3 9parallel
Strand 3
B
130 136parallel
Strand 4
B
163 167parallel
Strand 5
B
198 203parallel
Strand 6
B
265 267parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
59 61anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
363 370anti-parallel
Strand 3
B
312 319anti-parallel
Strand 4
B
349 350parallel
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