Analysis of interatomic Contacts of Structural Units in PDB entry:
5W3K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W3K entry

There are 2 chains in PDB entry 5W3K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ILE 327
B
 THR 2ILE 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5W3K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
26 39Right-handed alpha
Helix 3
AA3
A
50 59Right-handed alpha
Helix 4
AA4
A
65 73Right-handed alpha
Helix 5
AA5
A
81 93Right-handed alpha
Helix 6
AA6
A
94 97Right-handed 310
Helix 7
AA7
A
108 113Right-handed alpha
Helix 8
AA8
A
132 143Right-handed alpha
Helix 9
AA9
A
159 171Right-handed alpha
Helix 10
AB1
A
172 176Right-handed 310
Helix 11
AB2
A
182 197Right-handed alpha
Helix 12
AB3
A
199 216Right-handed alpha
Helix 13
AB4
A
219 228Right-handed alpha
Helix 14
AB5
A
228 250Right-handed alpha
Helix 15
AB6
A
251 266Right-handed alpha
Helix 16
AB7
A
267 283Right-handed alpha
Helix 17
AB8
A
284 296Right-handed alpha
Helix 18
AB9
A
298 309Right-handed alpha
Helix 19
AC1
A
311 323Right-handed alpha
Helix 20
AC2
B
6 10Right-handed 310
Helix 21
AC3
B
26 39Right-handed alpha
Helix 22
AC4
B
50 59Right-handed alpha
Helix 23
AC5
B
65 73Right-handed alpha
Helix 24
AC6
B
81 93Right-handed alpha
Helix 25
AC7
B
94 97Right-handed 310
Helix 26
AC8
B
108 113Right-handed alpha
Helix 27
AC9
B
132 142Right-handed alpha
Helix 28
AD1
B
159 171Right-handed alpha
Helix 29
AD2
B
172 176Right-handed 310
Helix 30
AD3
B
182 197Right-handed alpha
Helix 31
AD4
B
199 216Right-handed alpha
Helix 32
AD5
B
219 228Right-handed alpha
Helix 33
AD6
B
228 250Right-handed alpha
Helix 34
AD7
B
251 266Right-handed alpha
Helix 35
AD8
B
267 283Right-handed alpha
Helix 36
AD9
B
284 296Right-handed alpha
Helix 37
AE1
B
298 310Right-handed alpha
Helix 38
AE2
B
311 323Right-handed alpha
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There are 2 sheets in PDB entry 5W3K. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
178 180anti-parallel
Strand 3
A
148 154parallel
Strand 4
A
123 129anti-parallel
Strand 5
A
102 105parallel
Strand 6
A
75 78parallel
Strand 7
A
19 23parallel
Strand 8
A
42 46parallel
Strand 9
A
62 64parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
178 180anti-parallel
Strand 3
B
148 154parallel
Strand 4
B
123 129anti-parallel
Strand 5
B
102 105parallel
Strand 6
B
75 78parallel
Strand 7
B
19 23parallel
Strand 8
B
42 46parallel
Strand 9
B
63 64parallel
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